BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZC02FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1167 1106 0.0
>3x_Contig1167
Length = 4801
Score = 1106 bits (558), Expect = 0.0
Identities = 599/610 (98%), Gaps = 2/610 (0%)
Strand = Plus / Minus
Query: 85 atccctcgaagaggaaaacagaacatgcagaaaagaccgcacaaaagcggttttgaaggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4765 atccctcgaagaggaaaacagaacatgcagaaaagaccgcacaaaagcggttttgaaggc 4706
Query: 145 tccaaggtgtttcaaatatgactgactgtttttggttcagccaggtggctgcaaaatttg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4705 tccaaggtgtttcaaatatgactgactgtttttggttcagccaggtggctgcaaaatttg 4646
Query: 205 taccgtggaggctctctcgtcagttcatttttttatccactttttatcctcgaactgcta 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4645 taccgtggaggctctctcgtcagttcatttttttatccactttttatcctcgaactgcta 4586
Query: 265 cgatgttttcaatcgggagatctactacgcgaacgcttgtttatgcgcgtcctctatttc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4585 cgatgttttcaatcgggagatctactacgcgaacgcttgtttatgcgcgtcctctatttc 4526
Query: 325 atattttttcccatttattaagcgcaatatagcagatattacatagtttccttagtaggt 384
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4525 atattttttcccatttattaagcgcaatatagcagatattacatagtttcctaagtaggt 4466
Query: 385 ctttttccttcgaatgatcggaattgcagtcaacgattcgtaaatttaccttgttttcaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 4465 ctttttccttcgaatgatcggaattgcagtcaacgattcgtaaatttaccttg-tttcga 4407
Query: 445 gaaagtgcgccatctgaaacacccgtattcaataacaacagaagcattcagttatattta 504
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4406 gaaagtgcgcaatctgaaacacccgtattcaataacaacagaagcattcagttatattta 4347
Query: 505 tgggctcaattagacacttgata-aacacaggaattaggcattgtacgcatttttgaaag 563
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 4346 tgggctcaattagacacttgatataacacaggaattaggcattgtacgcatttttgaaag 4287
Query: 564 taggggagattctagtcgcggtgtaccgagtagtattgtccgttttctgtgttcaagagt 623
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4286 taggggagattctagtcgcggtgtaccgagtagtattgtccgttttctgtgttcgagagt 4227
Query: 624 ctttgaaattttttttttttttatcttaacgatcgaggaaatggccccatttatttaaac 683
||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||| |||||
Sbjct: 4226 ctttgaaattttttttttttttatctttacgatcgaggagatggcgccatctatgtaaac 4167
Query: 684 aaaacatctt 693
||||||||||
Sbjct: 4166 aaaacatctt 4157
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,184
Number of Sequences: 1807
Number of extensions: 16184
Number of successful extensions: 408
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)