BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZC02RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1534 1469 0.0
>3x_Contig1534
Length = 9979
Score = 1469 bits (741), Expect = 0.0
Identities = 848/880 (96%), Gaps = 3/880 (0%)
Strand = Plus / Minus
Query: 48 acgacgagtatcttcagcacccatgaagactgtacattctagaccaaacttggcacatgc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4303 acgacgagtatcttcagcacccatgaagactgtacattctagaccaaacttggcacatgc 4244
Query: 108 ggtagcagttgccacaccgtgttggccggcaccagtttcagcaatgacctttttcttacc 167
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4243 ggtag-agttgccacaccgtgttggccggcaccagtttcagcaatgacctttttcttacc 4185
Query: 168 cagtctcttggcaattaaaacttgagccaaggcattgttaatcttgtgcgaaccagtgtg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4184 cagtctcttggcaattaaaacttgagccaaggcattgttaatcttgtgcgaaccagtgtg 4125
Query: 228 gttcaaatcttctctctttaaccagatttgagcaccgccacagtattcagtcaatctgtc 287
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 4124 gttcaaatcttctctctttaaccagattttagcaccgccacagtattcagtcaatctttt 4065
Query: 288 agccttgtggaaggaggaaggacgaccaatatagctgtataaactcttgaattcttccca 347
|||||| | || || ||| |||||||||||||| ||||||||||| ||||||||||
Sbjct: 4064 agccttttttttggtggtaggtcgaccaatatagctttataaactcttttattcttccca 4005
Query: 348 gaatgctggatcagcgacggcatcttcgaagcctctttccaattgtcttagacaagcatg 407
|||| |||| | |||| ||||||||||| | |||||||||||||| |||||||||||||
Sbjct: 4004 gaattctggtttagcgtcggcatcttcgtattctctttccaattgttttagacaagcatg 3945
Query: 408 tagagcttctggaacgtattgtccaccaaactctccgaaacgagccgggaacttgtggaa 467
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3944 tagagcttccggtacgtattgtccaccaaactctccgaaacgagccgggaacttgtggaa 3885
Query: 468 ttcttcgaactctttggcaactgttttattttccttagcagttgcaacattggccttgtg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3884 ttcttcgaactctttggcaactgttttattttccttagcagttgcaacattggccttgtg 3825
Query: 528 aatgttccagaactcttctttagaaagaaccttccccttcttaccaccagagatttcttc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3824 aatgttccagaactcttctttagaaagaaccttccccttcttaccaccagagatttcttc 3765
Query: 588 agcgtaattctttgcagtttcataacgtttatcttgagcagcctcaccgatcaaagtaac 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3764 agcgtaattctttgcagtttcataacgtttatcttgagcagcctcaccgatcaaagtaac 3705
Query: 648 gatcttggaaccaatgacaacaccatcggaaacagatccaacgacatcaaaatgctcctt 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3704 gatcttggaaccaatgacaacaccatcggaaacagatccaacgacatcaaaatgctcctt 3645
Query: 708 ggtagagataccgaacccaacagccaatggaatatcaccagagaatgatctaactttttg 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3644 ggtagagataccgaacccaacagccaatggaatatcaccagagaatgatctaactttttg 3585
Query: 768 gacaagagcacttaaatcgttagcgactgattctctggcaccagtggtacccatcctgga 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3584 gacaagagcacttaaatcgttagcgactgattctctggcaccagtggtacccatcctgga 3525
Query: 828 gac-acatagatgaatgaatcagcgagatgggacagtagactcaatctttcatctgttgt 886
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3524 gacaacatagatgaatgaatcagcgagatgggacagtagactcaatctttcatctgttgt 3465
Query: 887 agaaagagccacntatgggnattaaacttcatccgttttc 926
|||| ||||||| ||||| |||||||| ||||||||||
Sbjct: 3464 agaaggagccactaatggg-attaaactcaatccgttttc 3426
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5900
Number of Sequences: 1807
Number of extensions: 5900
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)