BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZC03FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig985 1441 0.0
>3x_Contig985
Length = 5529
Score = 1441 bits (727), Expect = 0.0
Identities = 783/799 (97%), Gaps = 3/799 (0%)
Strand = Plus / Plus
Query: 88 tttctcgtgaaatcaggcttttactcaaggcagctattgcgaaaggagctctgcataaaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3701 tttctcgtgaaatcaggcttttactcaaggcagctattgcgaaaggagctctgcataaaa 3760
Query: 148 atgattgggatcagcagcacttaacaagagtattttcagcgaaaactaacggaaatccaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3761 atgattgggatcagcagcacttaacaagagtattttcagcgaaaactaacggaaatccaa 3820
Query: 208 taaactcccaggaacggctatgctgtttcttatcccctgaagaaaaaagaattatcatag 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3821 taaactcccaggaacggctatgctgtttcttatcccctgaagaaaaaagaattatcatag 3880
Query: 268 atggcatcccatatgaacaacttggcattgaacgtccaaatgtatcaacatctaaagaca 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3881 atggcatcccatatgaacaacttggcattgaacgtccaaatgtatcaacatctaaagaca 3940
Query: 328 atactaacaattaccaagtgatagatcctacttcaatagtaacagttgaaacgcagtcaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3941 atactaacaattaccaagtgatagatcctacttcaatagtaacagttgaaacgcagtcaa 4000
Query: 388 aggtaccaccgccgcctcctccaattgattctaggccaaccccaccatgggctcagaatg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4001 aggtaccaccgccgcctcctccaattgattctaggccaaccccaccatgggctcagaatg 4060
Query: 448 ttagaacagcagatcctttgctaaatcagcagatgaatcccaaagaatcaccggtaccgt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4061 ttagaacagcagatcctttgctaaatcagcagatgaatcccaaagaatcaccggtaccgt 4120
Query: 508 cagtatcgttagaatctcgaatctcaaacttgaacgcaccaagcccttcccccgtaccca 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4121 cagtatcgttagaatctcgaatctcaaacttgaacgcaccaagcccttcccccgtaccca 4180
Query: 568 agaaaatagctgctcaagatgagaaaagcaggaggctggaaaggctaaagagatttgcta 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4181 agaaaatagctgctcaagatgagaaaagcaggaggctggaaaggctaaagagatttgcta 4240
Query: 628 gtcctgaaccactaacgtcaacctctanaagagtgaagatagacgacgacgacagctatt 687
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4241 gtcctgaaccactaacgtcaacctctaaaagagtgaagatagacgacgacgacagctatt 4300
Query: 688 ccgatctcaacgccatcactaancaagcttataaatttgacaagaacaagccgattgtgg 747
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 4301 ccgatctcaacgccatcactaacaaagcttataaatttgacaagaacaagccgattgtgg 4360
Query: 748 ggcaatgtcaagtgttaga-aaanaatatttaagacttac-tctgnaccagatccggc-a 804
||||||||||||||||||| ||| |||||||||||||||| |||| |||||||||||| |
Sbjct: 4361 ggcaatgtcaagtgttagagaaaaaatatttaagacttacttctgaaccagatccggcaa 4420
Query: 805 aagtacgcccgttgtccatttttatttaagctcttgactggattgggaccaagttcatta 864
||||||||||||||||||| || ||| |||||||||||||||||| ||||||||| ||
Sbjct: 4421 aagtacgcccgttgtccatgttaattaaagctcttgactggattgtgaccaagtttcata 4480
Query: 865 gcggttcgggctcttatca 883
|||||||| ||||||||||
Sbjct: 4481 gcggttcgtgctcttatca 4499
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5117
Number of Sequences: 1807
Number of extensions: 5117
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)