BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZC03RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1099 1641 0.0
>3x_Contig1099
Length = 3902
Score = 1641 bits (828), Expect = 0.0
Identities = 883/896 (98%), Gaps = 5/896 (0%)
Strand = Plus / Plus
Query: 48 gcttgcatgtatataggataattgaccgtcaaatcgttactttctgcaagtatatgagta 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1525 gcttgcatgtatataggataattgaccgtcaaatcgttactttctgcaagtatatgagta 1584
Query: 108 ccaatattctttcagtgcaaggcagtaccgttttaagtatgctttgagcaaacgctgctt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1585 ccaatattctttcagtgcaaggcagtaccgttttaagtatgctttgagcaaacgctgctt 1644
Query: 168 gcttatgttcacttcaccagtaaatatgtgtcctagatcatctaagacgaatgttgattt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1645 gcttatgttcacttcaccagtaaatatgtgtcctagatcatctaagacgaatgttgattt 1704
Query: 228 cttaatatcgatttcatcaaaatacttagctaaccatataatggtattcactgtttacga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1705 cttaatatcgatttcatcaaaatacttagctaaccatataatggtattcactgtttacga 1764
Query: 288 ttcactcatcgtggatatgttaaaagctggtataaaattgagcaggcggtgcatagaagg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1765 ttcactcatcgtggatatgttaaaagctggtataaaattgagcaggcggtgcatagaagg 1824
Query: 348 gaatccgaactgcgaacttcggcaataaaacgagatggacgttgacttcaaccgttccca 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1825 gaatccgaactgcgaacttcggcaataaaacgagatggacgttgacttcaaccgttccca 1884
Query: 408 ggaaactcacctgaagttcggacaaatcttgaaggaatatcaggcaagagtgttgagcga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1885 ggaaactcacctgaagttcggacaaatcttgaaggaatatcaggcaagagtgttgagcga 1944
Query: 468 tgaagcgtctcttgacccgttctctatagtgcaagacttcaggtccattgccggagaaga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1945 tgaagcgtctcttgacccgttctctatagtgcaagacttcaggtccattgccggagaaga 2004
Query: 528 ggcattggaaattgcagaatctggagaggagaatgataatgaacagttccagaactggga 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2005 ggcattggaaattgcagaatctggagaggagaatgataatgaacagttccagaactggga 2064
Query: 588 actagaggccaagttttgggatcttgttggcttgttagtggaatatcgaacatcagagac 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2065 actagaggccaagttttgggatcttgttggcttgttagtggaatatcgaacatcagagac 2124
Query: 648 agttgacaaagatattaacgttcattcatacaattcgaacgtagtattccaaaaacagtt 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2125 agttgacaaagatattaacgttcattcatacaattcgaacgtagtattccaaaaacagtt 2184
Query: 708 gttgcaatcaaataaggggatatatgaaatctggttaataaagtcatggcttgnagctaa 767
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2185 gttgcaatcaaataaggggatatatgaaatctggttaataaagtcatggcttgaggctaa 2244
Query: 768 cattggcatcccagagagaccatctagtttatgtactacanaatggtcgagttccatgat 827
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2245 cattggcatcccagagagaccatctagtttatgtactacaaaatggtcgagttccatgat 2304
Query: 828 agcaggcactgtgaaaagcatggattcgnattcgatcttaagagatcccacaacgaaatc 887
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||
Sbjct: 2305 agcaggcactgtgaaaagcatggattcggattcgatcttaagagatccaacaacg-aatc 2363
Query: 888 ttcagcccgnatgaatcgtcaaaaagatcatgcttttcttcgnatattgcgttccg 943
||||||| | ||| |||||||||| |||||||| |||||||| ||| |||||||||
Sbjct: 2364 ttcagcctg-atg-atcgtcaaaatgatcatgc-tttcttcgtata-tgcgttccg 2415
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5763
Number of Sequences: 1807
Number of extensions: 5763
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)