BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZC04FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1784 1106 0.0
>3x_Contig1784
Length = 28126
Score = 1106 bits (558), Expect = 0.0
Identities = 597/606 (98%), Gaps = 3/606 (0%)
Strand = Plus / Plus
Query: 87 ttggatatttggtgtcattctaaatggaacaggttcattattatggaaaacaggagcgga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26664 ttggatatttggtgtcattctaaatggaacaggttcattattatggaaaacaggagcgga 26723
Query: 147 gtttggcaagttagtctcaaattgttttgcatattgattcactctttcataagaataacg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26724 gtttggcaagttagtctcaaattgttttgcatattgattcactctttcataagaataacg 26783
Query: 207 agatggtaacatttctaaagtatgaacattacctgatttctcatcgacaaatatcttatg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26784 agatggtaacatttctaaagtatgaacattacctgatttctcatcgacaaatatcttatg 26843
Query: 267 tggagatctattattaatggatagcataaaggtcatgaacacgaacgccgcatactggga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26844 tggagatctattattaatggatagcataaaggtcatgaacacgaacgccgcatactggga 26903
Query: 327 agcaaactgtttacggaataaccaaaaatcttcgaactctgagaataatttggaatagta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26904 agcaaactgtttacggaataaccaaaaatcttcgaactctgagaataatttggaatagta 26963
Query: 387 gtctttcaataaagtcgatggaatgaacaacgaatgaattgaactg-aaaatttcaactt 445
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 26964 gtctttcaataaagtcgatggaatgaacaacgaatgaattgaactgaaaaatttcaactt 27023
Query: 446 tcactgcggttatgtcgggagggggcaatactttgtcatgtgcaacgttaagttgttcag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27024 tcactgcggttatgtcgggagggggcaatactttgtcatgtgcaacgttaagttgttcag 27083
Query: 506 tgataaagtcttgaatagcgtccctatccatgttcttcttggcacagaattcgtcataaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27084 tgataaagtcttgaatagcgtccctatccatgttcttcttggcacagaattcgtcataaa 27143
Query: 566 tttgatgcaatgttctgaaagacgcactgtcactcattacacgtactttgagagatagtg 625
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 27144 tttgatgcaatgttctgaaagacgcactgtcactcataacacgtacttgaggagatagtg 27203
Query: 626 gaacagcgatttggtacagtgaatttgatatcacgacgtcttagtctgaacatttttacg 685
||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 27204 gaacagcga-ttggtacagtgaattgaatatcacgacgtc-tagtctgaacatttttacg 27261
Query: 686 caatct 691
||||||
Sbjct: 27262 caatct 27267
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7090
Number of Sequences: 1807
Number of extensions: 7090
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)