BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZC04RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1772 1576 0.0
>3x_Contig1772
Length = 25851
Score = 1576 bits (795), Expect = 0.0
Identities = 830/838 (99%), Gaps = 3/838 (0%)
Strand = Plus / Minus
Query: 48 aatcccattttcattacgacatcctgggaaagttgtttgccattgcatgccaggagatat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16032 aatcccattttcattacgacatcctgggaaagttgtttgccattgcatgccaggagatat 15973
Query: 108 taggagtccggggcctaatttattgcaggtactgcttagagggtttggaactccgataga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15972 taggagtccggggcctaatttattgcaggtactgcttagagggtttggaactccgataga 15913
Query: 168 acaggaaatatcatatccatcttctatttccttcaagtttatattgtttatttcaattct 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15912 acaggaaatatcatatccatcttctatttccttcaagtttatattgtttatttcaattct 15853
Query: 228 ttcaattgtgtcataaatttcggctgagagatgcctaagtgtatcaatcacacttttcca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15852 ttcaattgtgtcataaatttcggctgagagatgcctaagtgtatcaatcacacttttcca 15793
Query: 288 taaaccgaaatctctccaatacaactttgctttgtttatactcaataaaacaatttcgtg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15792 taaaccgaaatctctccaatacaactttgctttgtttatactcaataaaacaatttcgtg 15733
Query: 348 tgagaaaactctctttttcaacttcagatccatactactccataagttaagtccatcgta 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15732 tgagaaaactctctttttcaacttcagatccatactactccataagttaagtccatcgta 15673
Query: 408 cttcttctcccaaatttgtttcaaaattggaatcaactgctctgtgttgggcttcactaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15672 cttcttctcccaaatttgtttcaaaattggaatcaactgctctgtgttgggcttcactaa 15613
Query: 468 tactaacagatccaagtcagtggtactattttgctgaatgttaatacatgtagtgttggg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15612 tactaacagatccaagtcagtggtactattttgctgaatgttaatacatgtagtgttggg 15553
Query: 528 tataataatttttcccaatgaaacgacgtcggtgtcgttttcttgcttgaaagtgtctaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15552 tataataatttttcccaatgaaacgacgtcggtgtcgttttcttgcttgaaagtgtctaa 15493
Query: 588 actgttcaaatcgaaacacagttccttcataatcctagtcccggcaaaagagataagctt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15492 actgttcaaatcgaaacacagttccttcataatcctagtcccggcaaaagagataagctt 15433
Query: 648 cttttgtcgttccgatacggctgatccagcttcataatctaaccacaccgaggattttac 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15432 cttttgtcgttccgatacggctgatccagcttcataatctaaccacaccgaggattttac 15373
Query: 708 tccaagtntgtagtaccgcttctcgtcaatgtatgtccatccgttaaatgaaatatcatt 767
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15372 tccaagtttgtagtaccgcttctcgtcaatgtatgtccatccgttaaatgaaatatcatt 15313
Query: 768 gatttcaacatttgtgatatctnccaatatgctcctt-aatgaaacatcatctggaagca 826
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 15312 gatttcaacatttgtgatatct-ccaatatgctccttaaatgaaacatcatctggaagca 15254
Query: 827 cacgattttacatatttaagacccagaaatatggtagtaggttatagcacaatgaatg 884
|| ||||| |||||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct: 15253 ca-gatttaacatatataagacccagaaatatggtagtagttaatagcacaatgaatg 15197
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7158
Number of Sequences: 1807
Number of extensions: 7158
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)