BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZC05FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1352 1223 0.0
>3x_Contig1352
Length = 6660
Score = 1223 bits (617), Expect = 0.0
Identities = 696/715 (97%), Gaps = 6/715 (0%)
Strand = Plus / Plus
Query: 86 taatttctctccatgcctcatatattggtggagactgttcgaattataagaagtggtatt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1816 taatttctctccatgcctcatatattggtggagactgttcgaattataagaagtggtatt 1875
Query: 146 ttgccgcccaactagatttagatgaagagattggattcccttacatgaaacttcatggta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1876 ttgccgcccaactagatttagatgaagagattggattcccttacatgaaacttcatggta 1935
Query: 206 aatcaaagaagagaaatgcaaagttcgcaagcgagaaaggtatttcaattaaagagcaac 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1936 aatcaaagaagagaaatgcaaagttcgcaagcgagaaaggtatttcaattaaagagcaac 1995
Query: 266 aacgactgtggaaacagaagcaggatgaatttttggagaattatcccaaaattataatgt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1996 aacgactgtggaaacagaagcaggatgaatttttggagaattatcccaaaattataatgt 2055
Query: 326 cagaaaatgagaggaaaactggttcctcatataaagccgccgattacaaatggaaaatga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2056 cagaaaatgagaggaaaactggttcctcatataaagccgccgattacaaatggaaaatga 2115
Query: 386 agatgaactctcttacttcatcacaaatgactagacagctagcgttatatttattaatct 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2116 agatgaactctcttacttcatcacaaatgactagacagctagcgttatatttattaatct 2175
Query: 446 ggggagaagcaaaccaattgagatttacaccagaatgcctctgttttatatttaagtgcg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2176 ggggagaagcaaaccaattgagatttacaccagaatgcctctgttttatatttaagtgcg 2235
Query: 506 cattagattatgattctagcttgcaggacatcgaagattcatcccaagatgaatttactt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2236 cattagattatgattctagcttgcaggacatcgaagattcatcccaagatgaatttactt 2295
Query: 566 ttctaaataatatcatcaccccgatttacaaattcatcagggatcaagtttatacactta 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2296 ttctaaataatatcatcaccccgatttacaaattcatcagggatcaagtttatacac-ta 2354
Query: 626 ga-tcacagggcanactaattagaaaggaaaaggaccacanggatattattgggtacgat 684
|| |||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||
Sbjct: 2355 gattcacagggcaaactaataagaagggaaaaggaccacaaggatattattgggtacgat 2414
Query: 685 gatgtgaatcaattatttttggtatcctgaaggaaatcgaacggattggtctaaaatttt 744
||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| | |
Sbjct: 2415 gatgtgaatcaatta-ttttggtatcctgaagg-aatcgaacggattgtcctaaaa-tct 2471
Query: 745 tgagcaggattggttgaatacccttttagaaaataggattcttctatggaaagac 799
||||| ||||||||| |||||| |||||||||||| ||||||||| |||||||
Sbjct: 2472 ggagcaagattggttg-atacccctttagaaaatagatttcttctattgaaagac 2525
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7442
Number of Sequences: 1807
Number of extensions: 7442
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)