BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZC05RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1576 1520 0.0
>3x_Contig1576
Length = 13648
Score = 1520 bits (767), Expect = 0.0
Identities = 813/823 (98%), Gaps = 5/823 (0%)
Strand = Plus / Plus
Query: 45 gcttcaataagctcaggcacaagatctagctctgtgaacgattcgaagatttcttctgat 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6169 gcttcaataagctcaggcacaagatctagctctgtgaacgattcgaagatttcttctgat 6228
Query: 105 tcttctggttgttcattggaattagaatctttactgttactttgtgctgaatcttcgtcg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6229 tcttctggttgttcattggaattagaatctttactgttactttgtgctgaatcttcgtcg 6288
Query: 165 gatggggaaggttcgttagcatgtgcttgctgctgcttctccaatgcctttctcttgatc 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6289 gatggggaaggttcgttagcatgtgcttgctgctgcttctccaatgcctttctcttgatc 6348
Query: 225 ttctcagctaatgaaaggacctgattgtttttaactgcttgcttcttttcgattttagcc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6349 ttctcagctaatgaaaggacctgattgtttttaactgcttgcttcttttcgattttagcc 6408
Query: 285 attgcaatactttataattttttggttctttaggcaaatattatgtactctaatcaaaag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6409 attgcaatactttataattttttggttctttaggcaaatattatgtactctaatcaaaag 6468
Query: 345 cagctacttcaactattacaagatcttacttgaaatgactaaactaagctaacactattt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6469 cagctacttcaactattacaagatcttacttgaaatgactaaactaagctaacactattt 6528
Query: 405 cctcgtgttgcacttaatctcatctcatcgcatctttaaaacttcactgtattcggtttt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6529 cctcgtgttgcacttaatctcatctcatcgcatctttaaaacttcactgtattcggtttt 6588
Query: 465 tttcttaggacactgaaactgtggaaaagaaacgttctcttcagtatatgaaaattttct 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6589 tttcttaggacactgaaactgtggaaaagaaacgttctcttcagtatatgaaaattttct 6648
Query: 525 acagatcgccaatacgatatggaaagaaaaaaatagagatgagatgagatgagatagcat 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6649 acagatcgccaatacgatatggaaagaaaaaaatagagatgagatgagatgagatagcat 6708
Query: 585 tgaattacagctattctcaacaacttttaatcagaaagtcttttattggtacctaaagca 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6709 tgaattacagctattctcaacaacttttaatcagaaagtcttttattggtacctaaagca 6768
Query: 645 atcgttagatactcatatacagcagaagcttacgctgaagaaactgtaaatatggcttaa 704
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 6769 atcgttagatactcatatacagcagaagcttacgctgaagaaactgtaaatatggc-taa 6827
Query: 705 gag-agaactaanaacagaacacatgtgaagccatcgccagaagaattgaaaaaga-tcc 762
||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 6828 gagaagaactaaaaacagaacacatgtgaagccatcgccagaggaattgaaaaagattcc 6887
Query: 763 taagtcgatggtgatccgagtgggtcaaacatcattagctagtcattctttgaatc-att 821
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 6888 taagtcgatggtgatccgagtgggtcaaacatcattagctagtcattctttgaatcaatt 6947
Query: 822 gntgaaggacttncgtaccattatgcagncac-cactgctatt 863
| |||||||||| ||||||||||||||| ||| ||||||||||
Sbjct: 6948 ggtgaaggacttccgtaccattatgcagccacacactgctatt 6990
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9359
Number of Sequences: 1807
Number of extensions: 9359
Number of successful extensions: 574
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)