BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZC06RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1580 1292 0.0
>3x_Contig1580
Length = 11743
Score = 1292 bits (652), Expect = 0.0
Identities = 772/803 (96%), Gaps = 8/803 (0%)
Strand = Plus / Plus
Query: 48 ataacattaaaagctatcaacaacgcatcgaactctgcccatcgtgagaaattagattgt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3926 ataacattaaaagctatcaacaacgcatcgaactctgcccatcgtgagaaattagattgt 3985
Query: 108 atctgggtcttatatatacaatgtaaagagttcacaataaagaacgttgttactactgag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3986 atctgggtcttatatatacaatgtaaagagttcacaataaagaacgttgttactactgag 4045
Query: 168 ggatcgttactttttgttacttttactttaatgtctaaacattcgatgactacatggaga 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4046 ggatcgttactttttgttacttttactttaatgtctaaacattcgatgactacatggaga 4105
Query: 228 taaatcactaaaaaccaatggtagctacgagaaagacactagccgcaatccgttatcggc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4106 taaatcactaaaaaccaatggtagctacgagaaagacactagccgcaatccgttatcggc 4165
Query: 288 atccgacccaagaggaggaaactataatatgtctgttgatcagaacccttgataaatcct 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4166 atccgacccaagaggaggaaactataatatgtctgttgatcagaacccttgataaatcct 4225
Query: 348 ttaagctccttgaaaatcctttaattgagtcagtatcaacaagtttgatcatcactttcc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4226 ttaagctccttgaaaatcctttaattgagtcagtatcaacaagtttgatcatcactttcc 4285
Query: 408 tcaggtaagagccgttcaaatcatcttttgaatttctccccaatggtcggggcctcagtt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4286 tcaggtaagagccgttcaaatcatcttttgaatttctccccaatggtcggggcctcagtt 4345
Query: 468 cactgcgctcaagagataaatcgggaccggacgttttcccatcttgtgacacagtcagtt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4346 cactgcgctcaagagataaatcgggaccggacgttttcccatcttgtgacacagtcagtt 4405
Query: 528 tattaattatttatcggtcaccataatcagttccatttcggtacgacctcttatgtgctg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4406 tattaattatttatcggtcaccataatcagttccatttcggtacgacctcttatgtgctg 4465
Query: 588 ttaccattttcgggtatgttctccactttatctgttctgctcaacttcttga-gtcatgt 646
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 4466 ttaccattttcgggtatgttctccactttatctgttctgctcaactttctgaggtcatgt 4525
Query: 647 cattttctcccccac-aaaatgcgcgcct-ttacaaaaacaaaaggatcaaccaaattaa 704
||||||||||||||| ||||||||||||| | |||||||||| |||||||||||| ||
Sbjct: 4526 cattttctcccccacaaaaatgcgcgcctaacaaaaaaacaaaaagatcaaccaaataaa 4585
Query: 705 gaaaacgaaaattgttactgtaacgtgacgcggaagtataaaaagatttagtttacc--a 762
|||||||||||||||||||||||||||||||||||| ||||| ||| || ||| | |
Sbjct: 4586 gaaaacgaaaattgttactgtaacgtgacgcggaagattaaaaggatgtaagttaacaaa 4645
Query: 763 aggaaactggatgagaattttttatgagaatt-cttcttgtggaaaaac-accgctgttt 820
|||| ||||||||||||| | | |||||||| || | ||||||||||| | ||||| ||
Sbjct: 4646 aggagactggatgagaatctctagtgagaattactacatgtggaaaaacaagcgctgctt 4705
Query: 821 gatcc-ataaatttttttttttt 842
||||| |||||||||||||||||
Sbjct: 4706 gatccaataaatttttttttttt 4728
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,100
Number of Sequences: 1807
Number of extensions: 14100
Number of successful extensions: 117
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)