BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZC07FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig581 1185 0.0
>3x_Contig581
Length = 1616
Score = 1185 bits (598), Expect = 0.0
Identities = 671/689 (97%), Gaps = 5/689 (0%)
Strand = Plus / Minus
Query: 87 cagcacccatctctctaccgataccggattggccgaaaccaccgaatggaacattttgat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 cagcacccatctctctaccgataccggattggccgaaaccaccgaatggaacattttgat 777
Query: 147 ggaagttgttgtaggtgttaatccagacggtaccggccttaactctgttggaaacgtcaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 ggaagttgttgtaggtgttaatccagacggtaccggccttaactctgttggaaacgtcaa 717
Query: 207 tagccttgttaacatccttagtgtgaataccggcagcaagaccatattcagagtcgttag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tagccttgttaacatccttagtgtgaataccggcagcaagaccatattcagagtcgttag 657
Query: 267 ccttagcgacgacttcgtcaacggtagtgaacttagagactgttacaacaggaccaaaga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ccttagcgacgacttcgtcaacggtagtgaacttagagactgttacaacaggaccaaaga 597
Query: 327 tttcttccttaacaatttgcatgtcttctttaacatcagcaaagatagttggcttgataa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tttcttccttaacaatttgcatgtcttctttaacatcagcaaagatagttggcttgataa 537
Query: 387 agtaacccttgttaccgattctttcaccaccagtgatgacacgagcaccttcagaagtac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 agtaacccttgttaccgattctttcaccaccagtgatgacacgagcaccttcagaagtac 477
Query: 447 cgacatcaacataggataagatcttgtcaatttgcatttgagaagtttgagcaccttgga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 cgacatcaacataggataagatcttgtcaatttgcatttgagaagtttgagcaccttgga 417
Query: 507 aaacgttttcttcgaatggattaccgacctttagagattcagcgtattgcttgaattttt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aaacgttttcttcgaatggattaccgacctttagagattcagcgtattgcttgaattttt 357
Query: 567 ctaagacctcttcgtaaacagtatcttgaacgtaaatttttgaacctgcgcaacagactt 626
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 356 ctaagacctcttcgtaaacagtatcttgaacgtaaattcttgaacctgcgcaacagactt 297
Query: 627 cacccggatttgtagaagatacccaaagcaatgttctttacagcttttattccagtcagc 686
|| ||||| |||||||||||||| |||||||||||||| ||||| ||||| | |||||||
Sbjct: 296 ca-ccggagttgtagaagataccaaaagcaatgttcttaacagc-tttatccaagtcagc 239
Query: 687 attaccgaaaacgatattttggagacttaccaccaagttnttaaagtgacccttcttgat 746
|| ||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 238 atcaccgaaaacgata-tttggagacttaccaccaagttc-taaagtga-ccttcttgat 182
Query: 747 gggattcgcacaagtttttataatttgac 775
|| || ||||||||||| ||||| ||||
Sbjct: 181 ggaatcggcacaagttttcataatgtgac 153
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6348
Number of Sequences: 1807
Number of extensions: 6348
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)