BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZC07RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1666 1263 0.0
>3x_Contig1666
Length = 16162
Score = 1263 bits (637), Expect = 0.0
Identities = 668/675 (98%), Gaps = 3/675 (0%)
Strand = Plus / Plus
Query: 39 aagcttgatatatgtactgaagtcatcaatcatttggtcaatcatcatcatggtaggctt 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12641 aagcttgatatatgtactgaagtcatcaatcatttggtcaatcatcatcatggtaggctt 12700
Query: 99 tttgagttttctagcgtattctaatctgattgatattatttcttggatcaaacgaagtgg 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12701 tttgagttttctagcgtattctaatctgattgatattatttcttggatcaaacgaagtgg 12760
Query: 159 aaacgttaaaagagaatgcaatttgtccaccggtaaaggtaagcgcatttcgtgaataga 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12761 aaacgttaaaagagaatgcaatttgtccaccggtaaaggtaagcgcatttcgtgaataga 12820
Query: 219 attttgttgcttcaaaaacaccaatttgctcttgaacatccaaggggcatgcttgaaaaa 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12821 attttgttgcttcaaaaacaccaatttgctcttgaacatccaaggggcatgcttgaaaaa 12880
Query: 279 gatctttttctgaaagataccttcgatgtccttctctttcataatttgttctgcgaaaga 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12881 gatctttttctgaaagataccttcgatgtccttctctttcataatttgttctgcgaaaga 12940
Query: 339 tctgtcatttttgaagataccttcagtgtctaacgaatctttcgtaaaagttacatccaa 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12941 tctgtcatttttgaagataccttcagtgtctaacgaatctttcgtaaaagttacatccaa 13000
Query: 399 atcatcattttgagtccattgtttcaatgcctctatctcatattgtaatccttcgtacga 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13001 atcatcattttgagtccattgtttcaatgcctctatctcatattgtaatccttcgtacga 13060
Query: 459 gtttatcaacgaattgagtgcttcaattctgcttacaaaattagaggttttggttacagg 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13061 gtttatcaacgaattgagtgcttcaattctgcttacaaaattagaggttttggttacagg 13120
Query: 519 tttctcgagattcatattggggagatttttccaatatccaaccactttgtaatatttatt 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13121 tttctcgagattcatattggggagatttttccaatatccaaccactttgtaatatttatt 13180
Query: 579 caatagtattttggcttcttctatgacaacttcanggttttcttc-ttttcatttttata 637
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 13181 caatagtattttggcttcttctatgacaacttcagggttttcttctttttcatttttata 13240
Query: 638 gntcaagatttcttcg-atacctcatcagcagtagttttaggatatttcaatgattttac 696
| |||||||||||||| |||||||||||||||||||||||| ||||| |||||| |||||
Sbjct: 13241 gttcaagatttcttcgaatacctcatcagcagtagttttagaatattccaatga-tttac 13299
Query: 697 gttgatcttcgacgg 711
|||||||||||||||
Sbjct: 13300 gttgatcttcgacgg 13314
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9224
Number of Sequences: 1807
Number of extensions: 9224
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)