BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZC08RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1521 1394 0.0
>3x_Contig1521
Length = 8057
Score = 1394 bits (703), Expect = 0.0
Identities = 791/814 (97%), Gaps = 7/814 (0%)
Strand = Plus / Plus
Query: 45 acttgatctcgatgactcaaaaaacca-cagatcttagatcgccttcataatatcaaaca 103
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1782 acttgatctcgatgactcaaaaaaccaacagatcttagatcgccttcataatatcaaaca 1841
Query: 104 caatcaggagattctacgactactaaaagaagaacgtacaagaaatttaaaagatttcaa 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1842 caatcaggagattctacgactactaaaagaagaacgtacaagaaatttaaaagatttcaa 1901
Query: 164 agaaagcttgaacaatgatgatataactcaaaagttgatattgctgacaggtaagccgaa 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1902 agaaagcttgaacaatgatgatataactcaaaagttgatattgctgacaggtaagccgaa 1961
Query: 224 aaaggaaatgagggttatcttcgaggaagagcttactaaattcaaaccgttgagtactag 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1962 aaaggaaatgagggttatcttcgaggaagagcttactaaattcaaaccgttgagtactag 2021
Query: 284 gattgaagcaacaatattcaaacaaaacaatttgattaacgacataaaaatcaagttgga 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2022 gattgaagcaacaatattcaaacaaaacaatttgattaacgacataaaaatcaagttgga 2081
Query: 344 cgaagttttcaaacttattggagtacaagataagacccctgaacaagaaaatacagtgaa 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2082 cgaagttttcaaacttattggagtacaagataagacccctgaacaagaaaatacagtgaa 2141
Query: 404 agaaagacagacctttttcgataaggttgaaaaggcttttaaccaattcgttatatttag 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2142 agaaagacagacctttttcgataaggttgaaaaggcttttaaccaattcgttatatttag 2201
Query: 464 taccgatttgccgaagggtttaaacttttacgacactttgctcaagatgactagagaatt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2202 taccgatttgccgaagggtttaaacttttacgacactttgctcaagatgactagagaatt 2261
Query: 524 aagccacgcatccacccctggacaatctgtaaacttgatagattccaacacattgccacc 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2262 aagccacgcatccacccctggacaatctgtaaacttgatagattccaacacattgccacc 2321
Query: 584 taacttaccacanaaatctacacaatctacaacacttacaaagagtttcgcanatttaaa 643
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2322 taacttaccacaaaaatctacacaatctacaacacttacaaagagtttcgcaaatttaaa 2381
Query: 644 c-tatgcaatgatgttaatgactcggtaactcaaagtcctgcaaatctcgcttacactaa 702
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2382 cttatgcaatgatgttaatgactcggtaactcaaagtcctgcaaatctcgctaacactaa 2441
Query: 703 atacaccngnagtgaaatcca-gtccgnctcaattacca-cgaaacctc-ttctaccgnt 759
||||| | |||| |||||| ||||| ||||||||||| ||||||||| |||||||| |
Sbjct: 2442 taacacc-ggagtg-aatccaggtccgcctcaattaccaccgaaacctctttctaccggt 2499
Query: 760 atcagtgggcttgtcagcgatcaaaagctgcagaatggaccgacatcctttnnnatacat 819
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 2500 atcagtgggcttgtcagcgatcaaaagctgcagaatggaccgacatccttttataacaat 2559
Query: 820 ncatctgtctttgatgaaaatctctattcaaaat 853
|||||||||||||||||||||||||||| ||||
Sbjct: 2560 ccatctgtctttgatgaaaatctctattccaaat 2593
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6826
Number of Sequences: 1807
Number of extensions: 6826
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)