BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZC09RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1456 1661 0.0
>3x_Contig1456
Length = 10138
Score = 1661 bits (838), Expect = 0.0
Identities = 892/903 (98%), Gaps = 6/903 (0%)
Strand = Plus / Minus
Query: 48 agggaaagtttagctactgcaagggatgagctcaaatccaaaataaaagacttcgaggaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6684 agggaaagtttagctactgcaagggatgagctcaaatccaaaataaaagacttcgaggaa 6625
Query: 108 gaaagaaagcttctatctgaaggatcttctgaattaaatcaacagtattcggagaagatt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6624 gaaagaaagcttctatctgaaggatcttctgaattaaatcaacagtattcggagaagatt 6565
Query: 168 ttgaaacttgaagagactcttaacaatgtaaaagcagatcatgaaaaagcagttcagaaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6564 ttgaaacttgaagagactcttaacaatgtaaaagcagatcatgaaaaagcagttcagaaa 6505
Query: 228 ctggaaaacactattgaagcactagaacaacaggctgaagaatcaaagtctagcttagat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6504 ctggaaaacactattgaagcactagaacaacaggctgaagaatcaaagtctagcttagat 6445
Query: 288 actgaaaggtcactctcctccaaagagcagcagcaaaggttgcagctagaaaagatctta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6444 actgaaaggtcactctcctccaaagagcagcagcaaaggttgcagctagaaaagatctta 6385
Query: 348 gctaacgaacagaaggaaaataaagatctcgaaaacaaactagctgatcttgatcaacta 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6384 gctaacgaacagaaggaaaataaagatctcgaaaacaaactagctgatcttgatcaacta 6325
Query: 408 tttaaggaacacgaaaatacgttagagtctcaaacgaaaatatcacaagactataaacag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6324 tttaaggaacacgaaaatacgttagagtctcaaacgaaaatatcacaagactataaacag 6265
Query: 468 cagttagagaagaatagtcaggtcatcgaagagctgaaaagtgcagaatcagcactcaaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6264 cagttagagaagaatagtcaggtcatcgaagagctgaaaagtgcagaatcagcactcaaa 6205
Query: 528 gacaaattgatagctgctgaagaaaaaataaaagagtcagaaatattaacaagtcaactt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6204 gacaaattgatagctgctgaagaaaaaataaaagagtcagaaatattaacaagtcaactt 6145
Query: 588 gacgaggcagttacttccacgtctgctttgttagaagaacagacaaagcttanaaagagt 647
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 6144 gacgaggcagttacttccacgtctgctttgttagaagaacagacaaagcttaaaaagagt 6085
Query: 648 atctcagacctggaagcanagaatattaaggattgtggagaaatggaaatactaaggaaa 707
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 6084 atctcagacctggaagcaaagaatattaaggattgtggagaaatggaaatactaaggaaa 6025
Query: 708 gaattaagcanatgtcaagagtcacttaaagtttcgcaacgcctcaacgaagagaaagat 767
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6024 gaattaagcaaatgtcaagagtcacttaaagtttcgcaacgcctcaacgaagagaaagat 5965
Query: 768 gaagc-aacaagcgtaccgaaactgacattgtatccttgcaaaaagagatt-atactcta 825
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5964 gaagcaaacaagcgtaccgaaactgacattgtatccttgcaaaaagagattaatactcta 5905
Query: 826 aaagaag-actcagaac-aaaaatgatgaaatatcgtgttttgaagcagacaaaaagg-a 882
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 5904 aaagaagaactcagaacaaaaaatgatgaaatatcgtgttttgaagcagacaaaaaggaa 5845
Query: 883 atgattgctaaactaaaggagcttgaagaatcgaaaa-tctgctagtacattctgcccca 941
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 5844 atgatagctaaactaaaggagcttgaagaatcgaaaactctgctagtacattctgcccaa 5785
Query: 942 gaa 944
|||
Sbjct: 5784 gaa 5782
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8365
Number of Sequences: 1807
Number of extensions: 8365
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)