BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZC10FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1331 1086 0.0
>3x_Contig1331
Length = 5830
Score = 1086 bits (548), Expect = 0.0
Identities = 637/662 (96%), Gaps = 4/662 (0%)
Strand = Plus / Plus
Query: 87 tgaggttggtagaagtctctaaagagtcattatacagcgaccgcaagaacccatatgaag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1887 tgaggttggtagaagtctctaaagagtcattatacagcgaccgcaagaacccatatgaag 1946
Query: 147 atgaaaacccaacaaccagaatttacacaattatcaagaaaatggcgactgaaaatggta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1947 atgaaaacccaacaaccagaatttacacaattatcaagaaaatggcgactgaaaatggta 2006
Query: 207 gatttaataaaagattaccgtatgatgctattgtaagaacgattagatcaagaggtttca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2007 gatttaataaaagattaccgtatgatgctattgtaagaacgattagatcaagaggtttca 2066
Query: 267 ctatgctgcaactggtaagctgtatcaaagagtatgagtatcttaatgtttggcatcaaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2067 ctatgctgcaactggtaagctgtatcaaagagtatgagtatcttaatgtttggcatcaaa 2126
Query: 327 tagaagacggaaacaccttgctatttattgacgatattgatgatacaacggaagacaatt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2127 tagaagacggaaacaccttgctatttattgacgatattgatgatacaacggaagacaatt 2186
Query: 387 ctgatataactaacccttcgacgcanaggacaccggatgaagatgtcgatatggaataat 446
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2187 ctgatataactaacccttcgacgcaaaggacaccggatgaagatgtcgatatggaataat 2246
Query: 447 acctgactatctgcataccactaatctgttttgatccaataatgcctttattccttattt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2247 acctgactatctgcataccactaatctgttttgatccaataatgcctttattccttattt 2306
Query: 507 tagttntaaacctagtttaacgaccaatttggattactatatactaacgtttaaagtact 566
||||| |||||||||||||||||| |||||| |||||||||||||||||||| |||||
Sbjct: 2307 tagttttaaacctagtttaacgacaaatttgtattactatatactaacgttt-aagtaac 2365
Query: 567 ttttaatgtgcctcttcttccagatagactggacgatgcagaagtaatcacagtctacct 626
|| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 2366 ttctaatgtgcctcttctcccagatagactgaacgatgcagaagtaatcacagtctatct 2425
Query: 627 ttcaaaacc-aaattaatttggcgaaattaaaatctatctattttgggcataaa-ctaac 684
||||||||| ||||||||||| |||| | ||||||||||||||||| ||||||| ||| |
Sbjct: 2426 ttcaaaaccaaaattaatttgtcgaattcaaaatctatctattttgtgcataaacctagc 2485
Query: 685 ttatgccatttactacttaatctaagg-gagtttacatttttgtttacaccttctggaac 743
||||||||| ||||||||| ||||||| ||||||||| |||||||||| |||||| |||
Sbjct: 2486 ttatgccatctactacttagtctaaggtaagtttacatatttgtttacaacttctgaaac 2545
Query: 744 ct 745
||
Sbjct: 2546 ct 2547
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6742
Number of Sequences: 1807
Number of extensions: 6742
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)