BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC45ZC10RM1.SCF screened BAC_end
         (968 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1426                                                        1362   0.0  

>3x_Contig1426 
          Length = 8319

 Score = 1362 bits (687), Expect = 0.0
 Identities = 731/739 (98%), Gaps = 5/739 (0%)
 Strand = Plus / Plus

                                                                        
Query: 56   cttcatggagagaacaacaatgaactatactatttgtttggagtagtgttaggtcttgca 115
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1776 cttcatggagagaacaacaatgaactatactatttgtttggagtagtgttaggtcttgca 1835

                                                                        
Query: 116  atatataacagtactatattggacttacattttgcgagggccatgtacaagaaactatgc 175
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1836 atatataacagtactatattggacttacattttgcgagggccatgtacaagaaactatgc 1895

                                                                        
Query: 176  aatgagcggatcacttttgaagattatgaggagttgtaccctgagacagcaagaaattta 235
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1896 aatgagcggatcacttttgaagattatgaggagttgtaccctgagacagcaagaaattta 1955

                                                                        
Query: 236  aagaaaatgttgagttattcggaactagattttagtgatatatttggattgtcgtttgag 295
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1956 aagaaaatgttgagttattcggaactagattttagtgatatatttggattgtcgtttgag 2015

                                                                        
Query: 296  accacgtattacgatgtagccagtggtatcaacgtcacgaaaccgttatgtgacggagga 355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2016 accacgtattacgatgtagccagtggtatcaacgtcacgaaaccgttatgtgacggagga 2075

                                                                        
Query: 356  gaatcaatcccagtaacctcggagaataagacagagtttgttgaaaggtgggtaaatttt 415
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2076 gaatcaatcccagtaacctcggagaataagacagagtttgttgaaaggtgggtaaatttt 2135

                                                                        
Query: 416  tatatgaatgagggggtctcatcgagttttagtgcattccaatccgggtttacaagagtc 475
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2136 tatatgaatgagggggtctcatcgagttttagtgcattccaatccgggtttacaagagtc 2195

                                                                        
Query: 476  atcggggatggtttggctttcccgatgttcaaaagttgtgaagtagaaaggctcatctgt 535
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2196 atcggggatggtttggctttcccgatgttcaaaagttgtgaagtagaaaggctcatctgt 2255

                                                                        
Query: 536  ggcagcatagaacaagacatggatttcgaacaacttcgcgctgtgacgaaataccaaggc 595
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2256 ggcagcatagaacaagacatggatttcgaacaacttcgcgctgtgacgaaataccaaggc 2315

                                                                        
Query: 596  ggattccataaccaaaccccggtagtggaatggctatgggaaatactaccacaattatcc 655
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2316 ggattccataaccaaaccccggtagtggaatggctatgggaaatactaccacaattatcc 2375

                                                                        
Query: 656  catgaacagcaacgtcaatttctccatttcgtgactgggagtgacaga-tttcagtgacg 714
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 2376 catgaacagcaacgtcaatttctccatttcgtgactgggagtgacagagttccagtgacg 2435

                                                                        
Query: 715  ggacttgcgacgctttcgttcaaagtaacccgcacaacgtccggaatcacattgatcaag 774
            ||||||||||||||| ||||||| |||||||||||||||||||| |||||| ||||| ||
Sbjct: 2436 ggacttgcgacgcttccgttcaaggtaacccgcacaacgtccgg-atcaca-tgatc-ag 2492

                               
Query: 775  ttgcccactggcccatacc 793
            ||||||||| |||||||||
Sbjct: 2493 ttgcccact-gcccatacc 2510


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5802
Number of Sequences: 1807
Number of extensions: 5802
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)