BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC45ZC11FM1.SCF screened BAC_end
         (952 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1009                                                        1219   0.0  

>3x_Contig1009 
          Length = 4650

 Score = 1219 bits (615), Expect = 0.0
 Identities = 720/742 (97%), Gaps = 10/742 (1%)
 Strand = Plus / Minus

                                                                        
Query: 89   tctcttgaatatcgtactggcaatcatctcgtaataggtgtatatgtatatagtttgagt 148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1600 tctcttgaatatcgtactggcaatcatctcgtaataggtgtatatgtatatagtttgagt 1541

                                                                        
Query: 149  tttatgtttgtgtttaacctcgtgacaatacacatacatatatttaaatcctaatataaa 208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1540 tttatgtttgtgtttaacctcgtgacaatacacatacatatatttaaatcctaatataaa 1481

                                                                        
Query: 209  atatactctatcacaagaaccgaatcttcaactattcacatttcatacttcttatatata 268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1480 atatactctatcacaagaaccgaatcttcaactattcacatttcatacttcttatatata 1421

                                                                        
Query: 269  aaactagaaccgaaaaccatcttagtgtaacgatactaacactctgtgtgcatattaatc 328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1420 aaactagaaccgaaaaccatcttagtgtaacgatactaacactctgtgtgcatattaatc 1361

                                                                        
Query: 329  tcgggctaaacgaagcataaaaaagtcaaaccaaaaacagttaaaatgctaaagataacg 388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1360 tcgggctaaacgaagcataaaaaagtcaaaccaaaaacagttaaaatgctaaagataacg 1301

                                                                        
Query: 389  aggtaactgtcagaaagtcagtctgagacagctgttctaacctgatttccagttttaagg 448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1300 aggtaactgtcagaaagtcagtctgagacagctgttctaacctgatttccagttttaagg 1241

                                                                        
Query: 449  tacattacagtacaatgcagatactcagctaggcgaattttttttattttgagaattttt 508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1240 tacattacagtacaatgcagatactcagctaggcgaattttttttattttgagaattttt 1181

                                                                        
Query: 509  tgttggctttttcttttgcatcttagaaacgtgtgtaggactgagagttttgtgcgaaat 568
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1180 tgttggctttttcttttgcatcttagaaacgtgtgtaggactgagagttttgtgcgaaat 1121

                                                                        
Query: 569  cttgagtgtgtggactgagaaacggtgaaat-aatgtggtctgactaagtgtcattgtg- 626
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| 
Sbjct: 1120 cttgagtgtgtggactgagaaacggtgaaataaatgtggtctgactaagtgtcattgtga 1061

                                                                        
Query: 627  acgacgccgacacatagggctgtgcc-ggggcctgttacctttttcacacagtagtaat- 684
            |||||||||||||||||||||||||| |||||||||  |||||| |||||||||||||| 
Sbjct: 1060 acgacgccgacacatagggctgtgccgggggcctgtacccttttccacacagtagtaata 1001

                                                                        
Query: 685  ataataaacattagcttcgnggatgtttaaacggcat-aactgttaactatttggtatgc 743
            |||||||||||||||||||  ||||||| |||||||| |||||| ||||| |||||||| 
Sbjct: 1000 ataataaacattagcttcggtgatgttt-aacggcataaactgtaaacta-ttggtatg- 944

                                                                        
Query: 744  ccggtccgtatgtattgcatttttgcaacacgttaacttgggaaggaccttaattgattt 803
            |||||||||||||| |||||||||||||||||| ||| ||||||||| || |||||||||
Sbjct: 943  ccggtccgtatgtagtgcatttttgcaacacgtaaac-tgggaaggagctaaattgattt 885

                                  
Query: 804  ttttaattggatttttcaaatt 825
            ||| |||| ||||| |||||||
Sbjct: 884  tttaaatt-gatttctcaaatt 864


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7483
Number of Sequences: 1807
Number of extensions: 7483
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)