BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZC11RM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1426 1584 0.0
>3x_Contig1426
Length = 8319
Score = 1584 bits (799), Expect = 0.0
Identities = 821/827 (99%), Gaps = 1/827 (0%)
Strand = Plus / Plus
Query: 48 tgaatcaattattcaaaccaactgttaaagatcaaattataaactacgaaaaagcagtga 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tgaatcaattattcaaaccaactgttaaagatcaaattataaactacgaaaaagcagtga 642
Query: 108 cattttataatttgataggctcattgcctaccaaaagacccatttatctcattttacgtg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 cattttataatttgataggctcattgcctaccaaaagacccatttatctcattttacgtg 702
Query: 168 tctttaatgaggttttgaaaaggccaaagatcctaatggataaatgggagcactatttat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tctttaatgaggttttgaaaaggccaaagatcctaatggataaatgggagcactatttat 762
Query: 228 tcatttttttcatcttggaggtaccttctttaaggcaatgtattaacaacagtactacaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 tcatttttttcatcttggaggtaccttctttaaggcaatgtattaacaacagtactacaa 822
Query: 288 tttctagaacacccaagattaagactttaagttacgaaatattaaaaagatgtattggtt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 tttctagaacacccaagattaagactttaagttacgaaatattaaaaagatgtattggtt 882
Query: 348 acttggggtcaatgaatagtaaagtttcggtgaaatataagaatcacttagttcgtttac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 acttggggtcaatgaatagtaaagtttcggtgaaatataagaatcacttagttcgtttac 942
Query: 408 atccattgaaatttcaaaagcaatgggaaattttaaacttgtatttgagttatcagttcc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 atccattgaaatttcaaaagcaatgggaaattttaaacttgtatttgagttatcagttcc 1002
Query: 468 agaaaataggacccggtccgccgcattcaccacgaggattatcaggaacgttgttaactg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 agaaaataggacccggtccgccgcattcaccacgaggattatcaggaacgttgttaactg 1062
Query: 528 aatcatcgcctgtggatgaaaccaaagatggaactgtatcttatcttttccaccccggaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1063 aatcatcgcctgtggatgaaaccaaagatggaactgtatcttatcttttccaccccggaa 1122
Query: 588 ggcaaaagataccgttagagagcaggttcagaattgaaaaatacggacttgactggcata 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1123 ggcaaaagataccgttagagagcaggttcagaattgaaaaatacggacttgactggcata 1182
Query: 648 ttcgcacggtgtgtcagctaatgaacatatactttcaagctcattgtgaacagccaaaat 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1183 ttcgcacggtgtgtcagctaatgaacatatactttcaagctcattgtgaacagccaaaat 1242
Query: 708 gtgacatctccgttttttacaatatgataattgatttcattgattaccaacgtgatttta 767
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1243 gtgacatctcggttttttacaatatgataattgatttcattgattacaaacgtgatttta 1302
Query: 768 tgatgtggcattagatgaattgagagcattggaggacccttgacgatttatccatgacac 827
||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 1303 tgatgtggcataagatgaatagagagcaatggaggacccttgacgatttatccatgacac 1362
Query: 828 agttacatgaaacgcactatactgcctttatgccagtaccctttttt 874
|||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1363 agttacatgaaacgcactatactgcc-ttatgccagtaccctttttt 1408
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7608
Number of Sequences: 1807
Number of extensions: 7608
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)