BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZC12FM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig840 811 0.0
>3x_Contig840
Length = 3380
Score = 811 bits (409), Expect = 0.0
Identities = 486/504 (96%), Gaps = 7/504 (1%)
Strand = Plus / Minus
Query: 88 cttagcgtatggtgctgctccgtaagtcttcaacacttcaatgtccccttcggaaagtgg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2350 cttagcgtatggtgctgctccgtaagtcttcaacacttcaatgtccccttcggaaagtgg 2291
Query: 148 cacaaccttcttttcctccttcgattcctcgtcttcaataggagccttgtacttctccca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2290 cacaaccttcttttcctccttcgattcctcgtcttcaataggagccttgtacttctccca 2231
Query: 208 gtcttcctttggtggcataatgttttactgatgtattgcgctccttactaactcgatata 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2230 gtcttcctttggtggcataatgttttactgatgtattgcgctccttactaactcgatata 2171
Query: 268 taacgaattgacctcacttctctccattcgccaccctttccaaactgattttccatatta 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2170 taacgaattgacctcacttctctccattcgccaccctttccaaactgattttccatatta 2111
Query: 328 tcagtctctttaaatctttagttcgatttccattagttagattttcactgttaagaaaga 387
||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||
Sbjct: 2110 tcagtctctttaaatctttagttcgatttccataagttagatttccactgttaag--aga 2053
Query: 388 taatg-tacccgtttttattgatattcgttaaagag-tcccactaatgaacgttatatac 445
||||| |||||| ||||||||||||||| ||||||| ||| |||||||||||||||||||
Sbjct: 2052 taatgttacccggttttattgatattcggtaaagagttccaactaatgaacgttatatac 1993
Query: 446 gttatacatgagaggccttttttgtgtgtataaagttccttatgaatccattatgctatc 505
||||||||||||||| | ||||||||||||||| |||||| |||||||||| ||||||||
Sbjct: 1992 gttatacatgagaggtc-tttttgtgtgtataaggttcctaatgaatccataatgctatc 1934
Query: 506 gtttgccgggatgtgtatgacatcactagggctccaaatatttaagatcgccaagtctat 565
||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 1933 gtttgccaggatgtgtatgacatcactagggctccaaata-ttaagatcgccaggtctat 1875
Query: 566 tgctttgtaattttttattatttt 589
||| ||||||||||||||||||||
Sbjct: 1874 tgc-ttgtaattttttattatttt 1852
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,495
Number of Sequences: 1807
Number of extensions: 14495
Number of successful extensions: 82
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)