BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZD01RM1.SCF screened BAC_end
(889 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1728 1564 0.0
>3x_Contig1728
Length = 20685
Score = 1564 bits (789), Expect = 0.0
Identities = 829/836 (99%), Gaps = 5/836 (0%)
Strand = Plus / Minus
Query: 56 aacgttgctgacgaacattgtgaatatggagaaagtgttgcaaattttgttgcggagata 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13560 aacgttgctgacgaacattgtgaatatggagaaagtgttgcaaattttgttgcggagata 13501
Query: 116 ctactaacgtcagatgataaagggaccattctcgagctgcttttgaatgccttatacgac 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13500 ctactaacgtcagatgataaagggaccattctcgagctgcttttgaatgccttatacgac 13441
Query: 176 ttcaggaacatgtttgacgcaggaaggatttacattgcttatggagttctctgtggtgta 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13440 ttcaggaacatgtttgacgcaggaaggatttacattgcttatggagttctctgtggtgta 13381
Query: 236 gaaaaattgaaagaaagagtttttgaaactagacacattgaaataatcaggatgctgttc 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13380 gaaaaattgaaagaaagagtttttgaaactagacacattgaaataatcaggatgctgttc 13321
Query: 296 ctgtgccggtgtgaagagaatatcttacaaactactattcaaagcatttacttgaaatat 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13320 ctgtgccggtgtgaagagaatatcttacaaactactattcaaagcatttacttgaaatat 13261
Query: 356 atgctattttccaacttatctgctcctgaatttcttcaaacattagccatgcatgtcaag 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13260 atgctattttccaacttatctgctcctgaatttcttcaaacattagccatgcatgtcaag 13201
Query: 416 agtgataacggctatgaatacatatccagaacaataggcagtttccgtgacttttgtatt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13200 agtgataacggctatgaatacatatccagaacaataggcagtttccgtgacttttgtatt 13141
Query: 476 gtcaactataatcaatctttagaaggatatgaagttccacaagacgcattgtaccaagta 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13140 gtcaactataatcaatctttagaaggatatgaagttccacaagacgcattgtaccaagta 13081
Query: 536 cttgcctatgaattatttgattgtgagccttatgaaatctcggatcaatttttgattgag 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13080 cttgcctatgaattatttgattgtgagccttatgaaatctcggatcaatttttgattgag 13021
Query: 596 atcgtcaaagcagattgtaactattccgatttatcagaagaatattatgctttcttaact 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13020 atcgtcaaagcagattgtaactattccgatttatcagaagaatattatgctttcttaact 12961
Query: 656 gagttagtgacaatggaaagtaataactacaaggaagctaaagtcattttggacctacca 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12960 gagttagtgacaatggaaagtaataactacaaggaagctaaagtcattttggacctacca 12901
Query: 716 cagtttacgccagctgtctacggtgccattaatcctctgccaatttttaagagcttgttc 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12900 cagtttacgccagctgtctacggtgccattaatcctctgccaatttttaagagcttgttc 12841
Query: 776 tccgagtttttaccctgat-aatncgacttttttgtatcatttgtttgat-aggttatgc 833
|||||||||||| |||||| ||| |||||||||||||||| ||||||||| |||||||||
Sbjct: 12840 tccgagttttta-cctgataaattcgacttttttgtatca-ttgtttgataaggttatgc 12783
Query: 834 aaagtcctttctcagatcaccatatcctttgaaaaattgcttaatttataccgcat 889
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 12782 aaagtcc-ttctcagatcaccatatcctttgaaaatttgcttaatttataccgcat 12728
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6741
Number of Sequences: 1807
Number of extensions: 6741
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 889
length of database: 10,358,551
effective HSP length: 16
effective length of query: 873
effective length of database: 10,329,639
effective search space: 9017774847
effective search space used: 9017774847
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)