BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZD02FM1.SCF screened BAC_end
(989 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1782 1154 0.0
>3x_Contig1782
Length = 24703
Score = 1154 bits (582), Expect = 0.0
Identities = 686/708 (96%), Gaps = 10/708 (1%)
Strand = Plus / Plus
Query: 86 taggcatgtaaaactgccaaagggcaaagggtacaggggaaaagagcctgtgttccacta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 taggcatgtaaaactgccaaagggcaaagggtacaggggaaaagagcctgtgttccacta 663
Query: 146 ctttgtgaattagaaggccaatatcgatttagcttatgagtcattttctcactatgccga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ctttgtgaattagaaggccaatatcgatttagcttatgagtcattttctcactatgccga 723
Query: 206 gcgtcaaacccatcatatcgaacagacggtacagtagaaagactgagggtcttgatgaac 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gcgtcaaacccatcatatcgaacagacggtacagtagaaagactgagggtcttgatgaac 783
Query: 266 aatgggcgattttacaaaatggtatagataagatatttgacggtaaggttactgaactct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 aatgggcgattttacaaaatggtatagataagatatttgacggtaaggttactgaactct 843
Query: 326 cgtttgagaaactatatacaaccgtatatggactggtattgactaagaatggtccacagt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 cgtttgagaaactatatacaaccgtatatggactggtattgactaagaatggtccacagt 903
Query: 386 tgcatgaacgtctatcgagacagttgtcagatcattttggcaaagtgaggacatcatttg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 tgcatgaacgtctatcgagacagttgtcagatcattttggcaaagtgaggacatcatttg 963
Query: 446 atggaattacacgggcagaggcattgaatcttttg-accaagtatgggagaagcanaaag 504
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 964 atggaattacacgggcagaggcattgaatcttttgaaccaagtatgggagaagcaaaaag 1023
Query: 505 tgtatctgagccaaatctcagacgttttcattatatatggattctgtgtactctaaacga 564
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1024 tgtatctgagccaaatctcagacgttttca-tatatatggattctgtgtactctaaacga 1082
Query: 565 gaaaataagcctgatgttatgtctttggggtcgaggctattc-tgaaagaagtcgtagaa 623
||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||
Sbjct: 1083 gaaaataagcctgatgttatgtctttgggttcgaggctattcttgaaggaagtcgtagaa 1142
Query: 624 cacgttttccgtacgctt-agagttctttggttgatgagataaacccngcaaga-agagt 681
||||||| | |||||||| ||||||||||||||||||||||||||| |||||| |||||
Sbjct: 1143 cacgtttccggtacgcttaagagttctttggttgatgagataaaccaggcaagagagagt 1202
Query: 682 gcagcacagtactcaggatttgattttctcaggaacgctattggcagttcttaatagttt 741
|||||||||||||||||||||||| | |||| |||||||||| |||||||||||||||||
Sbjct: 1203 gcagcacagtactcaggatttgatatactcaagaacgctatt-gcagttcttaatagttt 1261
Query: 742 gggagctgaaagaagggtttgaacaagcgttttccttgatggaatttg 789
||||||||||| ||||| ||| | |||||||||| ||||||||||||
Sbjct: 1262 -ggagctgaaag-agggtatgagc-agcgttttcc-tgatggaatttg 1305
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7494
Number of Sequences: 1807
Number of extensions: 7494
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 989
length of database: 10,358,551
effective HSP length: 16
effective length of query: 973
effective length of database: 10,329,639
effective search space: 10050738747
effective search space used: 10050738747
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)