BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZD02RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1497 1530 0.0
>3x_Contig1497
Length = 11582
Score = 1530 bits (772), Expect = 0.0
Identities = 880/908 (96%), Gaps = 7/908 (0%)
Strand = Plus / Minus
Query: 48 taaccctttttaaaatcaggatctattcctgattttctacggcggatcgagtaccgatca 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9112 taaccctttttaaaatcaggatctattcctgattttctacggcggatcgagtaccgatca 9053
Query: 108 cccagttcaaagtacaatggcagcattacccaagagaattatcaaagtatgttgaaaatt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9052 cccagttcaaagtacaatggcagcattacccaagagaattatcaaagtatgttgaaaatt 8993
Query: 168 tttggaaacttacacgttcttttctatctgagtattaattaatagcgttataactaacca 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8992 tttggaaacttacacgttcttttctatctgagtattaattaatagcgttataactaacca 8933
Query: 228 agaaaaaaaaaaatatcatttacacaggaaactgaaaggttagtgagcgatccggtcccc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8932 agaaaaaaaaaaatatcatttacacaggaaactgaaaggttagtgagcgatccggtcccc 8873
Query: 288 ggaatcactgcagaaccacatgaggataatttacgttatttccaagtgacgatagagggt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8872 ggaatcactgcagaaccacatgaggataatttacgttatttccaagtgacgatagagggt 8813
Query: 348 ccgcagcaaagtccctatgaaaatggggtcttccaactagaattgttcctaccggatgat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8812 ccgcagcaaagtccctatgaaaatggggtcttccaactagaattgttcctaccggatgat 8753
Query: 408 tatccaatggaagcaccaaaggtaaggtttttgacaaaaatataccatcccaatatcgat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8752 tatccaatggaagcaccaaaggtaaggtttttgacaaaaatataccatcccaatatcgat 8693
Query: 468 cggttaggtagaatatgtctcgatgttttgaaaaataattggtcacctgcccttcaaatc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8692 cggttaggtagaatatgtctcgatgttttgaaaaataattggtcacctgcccttcaaatc 8633
Query: 528 agaacagtacttttgtccgtgcaagccttgcttgcatctccgaatccgaatgatccgtta 587
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 8632 agaacagtacttttgtccgtgcaagccttgcttgcatctccgaatccgaatgaaaagtta 8573
Query: 588 gctaatgacgtcgctgaggaatggatcaagcatgaagataccgcaattgcaaaggcaaaa 647
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 8572 gctaatgacgtcgctgaggaatggatcaagcatgaagataccgcaattgaaaaggcaaaa 8513
Query: 648 gaatggaccaaactttacgccaaacctactcaggatgaggaaccagcaaaagaataactc 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8512 gaatggaccaaactttacgccaaacctactcaggatgaggaaccagcaaaagaataactc 8453
Query: 708 gaatttgcaaatgatcttagc-taaattctaactcacacataccatatatttatatacat 766
||||| | ||||||||||||| |||||||||| | |||||||||||||||||||||||||
Sbjct: 8452 gaattagaaaatgatcttagcataaattctaaataacacataccatatatttatatacat 8393
Query: 767 gaacgtatatattcactaaactangagattagctggnaacagaatgnt-aacccactgac 825
||||||||||||||||||||||| |||||||||| ||||||||| | |||||||||||
Sbjct: 8392 gaacgtatatattcactaaactagaggattagctggaaacagaatgttaaacccactgac 8333
Query: 826 atatacaatcaaaaggc-ttttgtgtggtgtaactgccttcgttttcttgtgtc-agtgt 883
||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 8332 atatacaataaaaaggctttttgtgtggtgtaactgccttcgttttcttgtgtcaagtgt 8273
Query: 884 tcctggttctncatt-atcatctagaaacggctttctcgg-aatactggac-ttataaga 940
| || |||| ||| |||||||||||||||||||||||| |||||| ||| ||||| ||
Sbjct: 8272 taatgtttctcaattaatcatctagaaacggctttctcggaaatacttgacattatagga 8213
Query: 941 aaggtttt 948
||||||||
Sbjct: 8212 aaggtttt 8205
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,078
Number of Sequences: 1807
Number of extensions: 12078
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)