BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZD03FM1.SCF screened BAC_end
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1715 1102 0.0
>3x_Contig1715
Length = 16241
Score = 1102 bits (556), Expect = 0.0
Identities = 603/613 (98%), Gaps = 5/613 (0%)
Strand = Plus / Minus
Query: 86 tatcaagcctaatgttgattttcgctactacttagattgccatggttttttttgaacgtc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16222 tatcaagcctaatgttgattttcgctactacttagattgccatggttttttttgaacgtc 16163
Query: 146 aatgcaaattagtaatgctcttttcaggcattgtactaaaccttctcagcaagacccaca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16162 aatgcaaattagtaatgctcttttcaggcattgtactaaaccttctcagcaagacccaca 16103
Query: 206 agttggcaactgatattgattaagtgggtgatatttcttatatgaataatgttttttata 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16102 agttggcaactgatattgattaagtgggtgatatttcttatatgaataatgttttttata 16043
Query: 266 tgtgtgttaatggtacgctccaacgtatataaatgcggcattttacatatttcatctcca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16042 tgtgtgttaatggtacgctccaacgtatataaatgcggcattttacatatttcatctcca 15983
Query: 326 ttcccctaaatttcatctcatcttaattaaaagcttcctatttctttcaattaaaggttt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15982 ttcccctaaatttcatctcatcttaattaaaagcttcctatttctttcaattaaaggttt 15923
Query: 386 aaacagtaaggaatatcaatagttagtgttcagtgtagcattgcagtcaattgattatcc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15922 aaacagtaaggaatatcaatagttagtgttcagtgtagcattgcagtcaattgattatcc 15863
Query: 446 accaaagtttttagtacatcgaataatagaaaagcatgccatctccaagcgactaccgtt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15862 accaaagtttttagtacatcgaataatagaaaagcatgccatctccaagcgactaccgtt 15803
Query: 506 ctcaattgcttaataacgtagccctaggatatggtttgatgagtttcacctggagagcag 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15802 ctcaattgcttaataacgtagccctaggatatggtttgatgagtttcacctggagagcag 15743
Query: 566 aacctattgccccagaagctgcgtncanaaccttcaagaaagttcttgaatttactggtg 625
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 15742 aacctattgccccagaagctgcgtccaaaaccttcaagaaagttcttgaatttactggtg 15683
Query: 626 ataaaaagggcgttgttcaatgtttggtgaaattctacngttgaacttttgagcaactac 685
||||||| |||||||||||||| |||||| |||||||| | ||||| ||||||||||||
Sbjct: 15682 ataaaaa-ggcgttgttcaatg-ttggtg-aattctacgg-tgaacctttgagcaacta- 15628
Query: 686 caatttgttgcaa 698
||| |||||||||
Sbjct: 15627 caagttgttgcaa 15615
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7418
Number of Sequences: 1807
Number of extensions: 7418
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)