BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZD03RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig322 1620 0.0
>3x_Contig322
Length = 1586
Score = 1620 bits (817), Expect = 0.0
Identities = 872/884 (98%), Gaps = 5/884 (0%)
Strand = Plus / Minus
Query: 48 tggaaaccccaattgaagtt-ccaaatgggaagccaccttggtcaagaagttgttcggtc 106
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1242 tggaaaccccaattgaagttaccaaatgggaagccaccttggtcaagaagttgttcggtc 1183
Query: 107 ctaaattcagaaaagatgctccaaaagtggaagcccgtttactagcattttcacaagaag 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1182 ctaaattcagaaaagatgctccaaaagtggaagcccgtttactagcattttcacaagaag 1123
Query: 167 aattagaatcctactctgctcaattgaagaaagatggtaagatcactttgaatgttgaag 226
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1122 aattagaatcctactctgctcaattgaagaaagatggtaagatcactttgaaggttgaag 1063
Query: 227 gtatggaaggtgacgttgaagttgatgacaagatggtttctattgaaaaggtcaccaaca 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1062 gtatggaaggtgacgttgaagttgatgacaagatggtttctattgaaaaggtcaccaaca 1003
Query: 287 ccgaacatatcagagaattcgtaccaaacgtcatcgaaccatctttcggtatcggacgta 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 ccgaacatatcagagaattcgtaccaaacgtcatcgaaccatctttcggtatcggacgta 943
Query: 347 tcatctattccatcttcgaacactccttctggagcagaccagaagacactgccagagccg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 tcatctattccatcttcgaacactccttctggagcagaccagaagacactgccagagccg 883
Query: 407 tgttatcattccctccactagttgctccaaccaaggttctattggttcctctattgaaca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 tgttatcattccctccactagttgctccaaccaaggttctattggttcctctattgaaca 823
Query: 467 acccagaattatcgaagattactgcccaagtttcacaaatcttgagaaaggaacaaatcc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 acccagaattatcgaagattactgcccaagtttcacaaatcttgagaaaggaacaaatcc 763
Query: 527 cattcaaggttgacgaatctggtgtctctatcggtaagagatatgcccgtaacgatgaat 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cattcaaggttgacgaatctggtgtctctatcggtaagagatatgcccgtaacgatgaat 703
Query: 587 taggtactccattcggtgtcaccattgattttgattccgtcactgatggttccatcactt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 taggtactccattcggtgtcaccattgattttgattccgtcactgatggttccatcactt 643
Query: 647 tgagagaaagagactctaccaaacaagtcagaggttccgtcgcggacgtcatcaaggcta 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tgagagaaagagactctaccaaacaagtcagaggttccgtcgcggacgtcatcaaggcta 583
Query: 707 tccgtgaaatcacttatcaaggtgtttcatggngaagaaagtaccaaggacttggcccca 766
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 582 tccgtgaaatcacttatcaaggtgtttcatgg-gaagaaggtaccaaggacttggcccca 524
Query: 767 ttcaactctcaagctgaatcagaataaacgtttacataaatatcggctcctcttctgctt 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ttcaactctcaagctgaatcagaataaacgtttacataaatatcggctcctcttctgctt 464
Query: 827 tcattccgttcgaagaggatgaattganatgtaaat-atccccgcttaaatattaattaa 885
||||||||||||||||||||| ||| |||||||| |||||||||||||||||||| ||
Sbjct: 463 caattccgttcgaagaggatgaa-tgaaatgtaaataatccccgcttaaatattaataaa 405
Query: 886 gtatttcacgtttaaatattaaatctggtactattcccataatg 929
|||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 404 gtatttcacg-ttaaatattaaatctggtactattccaataatg 362
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6980
Number of Sequences: 1807
Number of extensions: 6980
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)