BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZD04FM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1763 1213 0.0
>3x_Contig1763
Length = 22654
Score = 1213 bits (612), Expect = 0.0
Identities = 777/821 (94%), Gaps = 9/821 (1%)
Strand = Plus / Minus
Query: 87 ggatgcatgtttgaggttattctgcaatagaggtgagactgttcttatggaggaatacac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21873 ggatgcatgtttgaggttattctgcaatagaggtgagactgttcttatggaggaatacac 21814
Query: 147 atattcttcatcgttagaagccgctgttgctcagggactcaactgtgttgcaatgaaaat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21813 atattcttcatcgttagaagccgctgttgctcagggactcaactgtgttgcaatgaaaat 21754
Query: 207 ggataaagatgggatcaaggtagataaattaagcgagatgttaagggattgggatgttgc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21753 ggataaagatgggatcaaggtagataaattaagcgagatgttaagggattgggatgttgc 21694
Query: 267 agttcaagggcctttcccaaaattattatacaccattccaaatggtcataatccaaccgg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21693 agttcaagggcctttcccaaaattattatacaccattccaaatggtcataatccaaccgg 21634
Query: 327 ttgtactttgcacgaggaaagaaaacctgagcttgtaaggcttgcatcgcagtacgattt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21633 ttgtactttgcacgaggaaagaaaacctgagcttgtaaggcttgcatcgcagtacgattt 21574
Query: 387 tattatcatcgaagatgatccatactatttcctacaaatgaacgagttcggtgcacctga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21573 tattatcatcgaagatgatccatactatttcctacaaatgaacgagttcggtgcacctga 21514
Query: 447 gttgaatgtccccggggacgtcaacgaaatgcaatggttcaaagaaaattttgttaataa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21513 gttgaatgtccccggggacgtcaacgaaatgcaatggttcaaagaaaattttgttaataa 21454
Query: 507 attgggcaggtctctattggaatgggatgacgttggtagaattattaggttagaatcggt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21453 attgggcaggtctctattggaatgggatgacgttggtagaattattaggttagaatcggt 21394
Query: 567 gtcgaanacttttgctccagggtgccgtctangctgggctattggcccccagtatctact 626
|||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 21393 gtcgaaaacttttgctccagggtgccgtctaggctgggctattggccccaggtatctact 21334
Query: 627 agatcaccttttggactatcatgaagtatcaatgcagtcaacttgccggatttgccccaa 686
||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 21333 agatcacctttggaactatcatgaagtatcaatgcagtcaacttg-cggatttgcccaaa 21275
Query: 687 ctcttatcacgggaatgttccaaagat-gggtcaaatt-ggtatttgaaaatggttacct 744
||||||||| |||||||||||||||| |||||||||| ||||| || ||||||||||
Sbjct: 21274 ctcttatcaacggaatgttccaaagatggggtcaaattgggtatatg-aaatggttacta 21216
Query: 745 aagctgtaaaatatgcttttc-atgaaaaggagattcttgttttgacttcaagccaaaaa 803
| |||| ||||| ||| ||| ||||||| ||||| ||| ||||||| | ||||||||
Sbjct: 21215 aggctgagaaata-gctattcaatgaaaa-gagatcattg-tttgactcaatgccaaaaa 21159
Query: 804 tttttgccaaatgaagattggtttttaaacttaccaatct-gggaaagtttttcatggna 862
| |||||||||||||| ||| | | ||||||||||||||| ||||| ||||||||||| |
Sbjct: 21158 tatttgccaaatgaagtttgctctataaacttaccaatctcgggaatgtttttcatggta 21099
Query: 863 atttttgcccctcccaagcctccaaagttcgaaggggaatt 903
| ||| ||||| ||||| ||||||||||||| |||||||
Sbjct: 21098 tatattgaccctcacaagcatccaaagttcgaaagggaatt 21058
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5974
Number of Sequences: 1807
Number of extensions: 5974
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)