BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZD04RM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1611 1451 0.0
>3x_Contig1611
Length = 15286
Score = 1451 bits (732), Expect = 0.0
Identities = 782/793 (98%), Gaps = 5/793 (0%)
Strand = Plus / Minus
Query: 49 tgcaatttaaattaatctcaaaaagacaaagaaagtactgacatctcgtcctagaagttc 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14158 tgcaatttaaattaatctcaaaaagacaaagaaagtactgacatctcgtcctagaagttc 14099
Query: 109 agtaccagagactgagcaacactaaacgaaactacaaacgaaactacaccgcattctgca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14098 agtaccagagactgagcaacactaaacgaaactacaaacgaaactacaccgcattctgca 14039
Query: 169 ccagatacagataacactgatttacctttcctggtttcaccgatagtcattgttttcatt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14038 ccagatacagataacactgatttacctttcctggtttcaccgatagtcattgttttcatt 13979
Query: 229 ttacctgcgtttcgccgacttacttgttaccgcaatatctgactgcatttttcgctcgat 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13978 ttacctgcgtttcgccgacttacttgttaccgcaatatctgactgcatttttcgctcgat 13919
Query: 289 aatcttttttttcatctatttcttgaactaggcgatttttcgtatttttctgtcaaaaaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13918 aatcttttttttcatctatttcttgaactaggcgatttttcgtatttttctgtcaaaaaa 13859
Query: 349 aaatcgaaaagaaaagtttatttctttttgcctgtaactgctttcaccgtttaaaccaat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13858 aaatcgaaaagaaaagtttatttctttttgcctgtaactgctttcaccgtttaaaccaat 13799
Query: 409 tattgcatatacaccgattaaggaaccttaaggtacggcatatacataaaccagatactc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13798 tattgcatatacaccgattaaggaaccttaaggtacggcatatacataaaccagatactc 13739
Query: 469 gacaccgagttagatttattgaaagacaaagataaatcgtattaaattgaagtaaattta 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13738 gacaccgagttagatttattgaaagacaaagataaatcgtattaaattgaagtaaattta 13679
Query: 529 ttctggtaaacgtagatctttccttgagttacgagacaacacaagacagacatccatcca 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13678 ttctggtaaacgtagatctttccttgagttacgagacaacacaagacagacatccatcca 13619
Query: 589 acatgcatagtaagacattcattcatcaattgcatcatatcttgatgcangatgaattga 648
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 13618 acatgcatagtaagacattcattcatcaattgcatcatatcttgatgcaggatgaattga 13559
Query: 649 tagaatggattagatggtctgaggatgatgagtccatgtttattatcaaaccgaacgctn 708
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13558 tagaatggattagatggtctgaggatgatgagtccatgtttattatcaaaccgaacgctc 13499
Query: 709 caaatttttctagcaaagtgttggaaacgtttttttcaagcacgttnatgtttccagttt 768
|||||||||||||||||||||| |||||| |||||||||||||| | |||||||||| ||
Sbjct: 13498 caaatttttctagcaaagtgtt-gaaacg-ttttttcaagcacggtaatgtttccag-tt 13442
Query: 769 tcgtgaggcagttgcacatgttatggtttccataagctaccgcacaagtgcgtcctccat 828
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 13441 tcgtgaggcagttgcacatg-tatggtttccataagctaccgcac-agtgcgtcctccac 13384
Query: 829 tttgccagcttct 841
|||| ||||||||
Sbjct: 13383 tttggcagcttct 13371
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7488
Number of Sequences: 1807
Number of extensions: 7488
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)