BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZD05FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1681 1261 0.0
>3x_Contig1681
Length = 11798
Score = 1261 bits (636), Expect = 0.0
Identities = 723/746 (96%), Gaps = 5/746 (0%)
Strand = Plus / Plus
Query: 88 ccggttattggcggtgaaacggttcgaagtgctttgttccagaagctaccgctaagttac 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5451 ccggttattggcggtgaaacggttcgaagtgctttgttccagaagctaccgctaagttac 5510
Query: 148 gtatgtaacttatccatgagttgtagaacaagaacattatcttcggtggatgtttgtctg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5511 gtatgtaacttatccatgagttgtagaacaagaacattatcttcggtggatgtttgtctg 5570
Query: 208 aacaagtaatcaagtctctgctttttgttaatggtgagaaattcatgatattctgggtcg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5571 aacaagtaatcaagtctctgctttttgttaatggtgagaaattcatgatattctgggtcg 5630
Query: 268 tctacattgtagtgaacaattgatagtgagtccacttcggcaaataaaacatattttttc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5631 tctacattgtagtgaacaattgatagtgagtccacttcggcaaataaaacatattttttc 5690
Query: 328 ccatcgtgcgcaagaagctcaaaacagtctctttcacttcttatatcataattcgttacg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5691 ccatcgtgcgcaagaagctcaaaacagtctctttcacttcttatatcataattcgttacg 5750
Query: 388 aggctcgggtgatcattttcgttacgtttgacgaatttgcctattatttcatttcttcta 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5751 aggctcgggtgatcattttcgttacgtttgacgaatttgcctattatttcatttcttcta 5810
Query: 448 agcggcaccgaatagggttcaaaaagatactgctgcaaagatgtagataggaaatcctct 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5811 agcggcaccgaatagggttcaaaaagatactgctgcaaagatgtagataggaaatcctct 5870
Query: 508 ttcgttctatctgtttttattgaatggaaattaatcgctaggtccatanggtaccaacga 567
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 5871 ttcgttctatctgtttttattgaatggaaattaatcgctaggtccatagggtaccaacga 5930
Query: 568 aacatcgatcgccgaaattttctctctatgacatcgaagtcatggcgtctaatatctctt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5931 aacatcgatcgccgaaattttctctctatgacatcgaagtcatggcgtctaatatctctt 5990
Query: 628 gtttcatacaattgacaaacc-tcctaaatgtccc-aaaaatgatatttcatctggaatc 685
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||
Sbjct: 5991 gtttcatacaattgacaaaccttcctaaatgtcccaaaaaatgatatttcatctgg-atc 6049
Query: 686 aattcc-aatttggatattgggtatgtggctgatgatagcttttggtcctggcattatta 744
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 6050 aattccgaatttggatattgggtatgtggctgatgatagctttgggtcctggcatatctc 6109
Query: 745 attgtattttacaactggggattctttcgactggaaaaagtacattaaaaactttgntta 804
||||||| ||||||||| |||||||| |||||| ||| |||||||||||||| || ||
Sbjct: 6110 attgtatcttacaactgcggattcttccgactgagaaatgtacattaaaaactctgtata 6169
Query: 805 aa-atttcttgccgaaaatttcattg 829
|| || |||||| || ||||||||||
Sbjct: 6170 aatatctcttgcagataatttcattg 6195
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7161
Number of Sequences: 1807
Number of extensions: 7161
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)