BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZD05RM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1027 1292 0.0
3x_Contig1600 163 8e-40
>3x_Contig1027
Length = 4522
Score = 1292 bits (652), Expect = 0.0
Identities = 675/679 (99%), Gaps = 3/679 (0%)
Strand = Plus / Plus
Query: 47 tgcttcaatgtcaacattgtaacattcaggaagctctgagttctccataagtctgtttgt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3846 tgcttcaatgtcaacattgtaacattcaggaagctctgagttctccataagtctgtttgt 3905
Query: 107 tataccgttttccatctgtgttctgatcctttgagcatccaactcctggaatacttttat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3906 tataccgttttccatctgtgttctgatcctttgagcatccaactcctggaatacttttat 3965
Query: 167 ttcattttcgtttctcgccaagatttcattgagttcgttatcatccaactgctcttcttc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3966 ttcattttcgtttctcgccaagatttcattgagttcgttatcatccaactgctcttcttc 4025
Query: 227 ttcaatgcctaactcacgtcttttcttttcctcttcctcagcttctagtaacgatctcaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4026 ttcaatgcctaactcacgtcttttcttttcctcttcctcagcttctagtaacgatctcaa 4085
Query: 287 taatgcctcttgttcttcagctgttgatttgttatcaaacttacctgcttgaataacttt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4086 taatgcctcttgttcttcagctgttgatttgttatcaaacttacctgcttgaataacttt 4145
Query: 347 tccgtcaatgtccaatttggcatgcgccttatcaagaattgcttcttccactgaattgtc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4146 tccgtcaatgtccaatttggcatgcgccttatcaagaattgcttcttccactgaattgtc 4205
Query: 407 tgtaattaatctaagaatacgcacttcattcttttgaccgattctatgagctctgtcttg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4206 tgtaattaatctaagaatacgcacttcattcttttgaccgattctatgagctctgtcttg 4265
Query: 467 ggcctgtaaatcctggtgaggattccaatcagtatcaaaaatgataacggtatctgcagt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4266 ggcctgtaaatcctggtgaggattccaatcagtatcaaaaatgataacggtatctgcagt 4325
Query: 527 ttgcaaatttaaacctaaaccaccagctcttgtagataaaaggaaacagaaataatcaga 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4326 ttgcaaatttaaacctaaaccaccagctcttgtagataaaaggaaacagaaataatcaga 4385
Query: 587 gtttggggcattgaaagtgtttaataatgcagtacgatcatcagatttagtatgaccgtc 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4386 gtttggggcattgaaagtgtttaataatgcagtacgatcatcagatttagtatgaccgtc 4445
Query: 647 taatcttaaagta-ttcatgtcaagatatctcaagaaatcttncatgatatccataactt 705
||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4446 taatctt-aagtatttcatgtcaagatatctcaagaaatcttccatgatatccataactt 4504
Query: 706 gcgtcatttggaagaaaat 724
|||||| ||||||||||||
Sbjct: 4505 gcgtca-ttggaagaaaat 4522
>3x_Contig1600
Length = 9359
Score = 163 bits (82), Expect = 8e-40
Identities = 225/270 (83%), Gaps = 2/270 (0%)
Strand = Plus / Minus
Query: 294 tcttgttcttcagctgttgatttgttatcaaacttacctgcttgaataacttttccgtca 353
|||||||||||||| || ||||| || ||||| ||||| |||||||||||||| || |||
Sbjct: 1740 tcttgttcttcagcagtagatttattgtcaaatttaccggcttgaataactttaccatca 1681
Query: 354 atgtccaatttg-gcatgcgccttatcaagaattgcttcttccactgaattgtctgtaat 412
|| |||||||| |||| || | || ||||| ||||||| || |||| | ||| ||
Sbjct: 1680 atatccaatttttgcatt-gctctctctagaataacttcttcgacggaatcggttgttat 1622
Query: 413 taatctaagaatacgcacttcattcttttgaccgattctatgagctctgtcttgggcctg 472
|||||| | |||||| ||||| ||||| || || ||||| |||||||| |||||||| ||
Sbjct: 1621 taatctcaaaatacgaacttcgttcttctgcccaattctgtgagctctatcttgggcttg 1562
Query: 473 taaatcctggtgaggattccaatcagtatcaaaaatgataacggtatctgcagtttgcaa 532
||||||||| |||||||||||||||||||| ||||| || || ||||| ||||| |||||
Sbjct: 1561 taaatcctgatgaggattccaatcagtatcgaaaataatgaccgtatcagcagtctgcaa 1502
Query: 533 atttaaacctaaaccaccagctcttgtaga 562
||||| |||||| ||||||||||| |||||
Sbjct: 1501 atttagacctaacccaccagctctggtaga 1472
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8454
Number of Sequences: 1807
Number of extensions: 8454
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 2
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)