BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZD06RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1576 0.0
>3x_Contig1801
Length = 57606
Score = 1576 bits (795), Expect = 0.0
Identities = 870/887 (98%), Gaps = 6/887 (0%)
Strand = Plus / Plus
Query: 45 cttgtgcataacatctgactcgtgataaaacagttggcgaaaccaaacgaaatggcctgc 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41531 cttgtgcataacatctgactcgtgataaaacagttggcgaaaccaaacgaaatggcctgc 41590
Query: 105 tcaatcttaacatatttgcaaacaattcttgttaagtatcactggatgtaaattgaacca 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41591 tcaatcttaacatatttgcaaacaattcttgttaagtatcactggatgtaaattgaacca 41650
Query: 165 agggctttggagaacttggtccaacctttttttcatttctattcgggcatcttgtactta 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41651 agggctttggagaacttggtccaacctttttttcatttctattcgggcatcttgtactta 41710
Query: 225 ttcactactataatgattcaaaaaataaaattataaagtttccacgatctgaaatttaaa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41711 ttcactactataatgattcaaaaaataaaattataaagtttccacgatctgaaatttaaa 41770
Query: 285 gctttaagcatgatgatatggaaactattgaaatgtaagagtcatacgctggctttgcag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41771 gctttaagcatgatgatatggaaactattgaaatgtaagagtcatacgctggctttgcag 41830
Query: 345 tagtcaatctagatctgtgaggcatagtgcaaagaatttgatactcaattacacaaattt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41831 tagtcaatctagatctgtgaggcatagtgcaaagaatttgatactcaattacacaaattt 41890
Query: 405 gacaaaatgagctctcaaccgcaagatatagtaaaggagatggcaaattctcttcgtaac 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41891 gacaaaatgagctctcaaccgcaagatatagtaaaggagatggcaaattctcttcgtaac 41950
Query: 465 agcagatcacaattggatatgacgcttgcacaactggaacaactacagaggcaaaaaaag 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41951 agcagatcacaattggatatgacgcttgcacaactggaacaactacagaggcaaaaaaag 42010
Query: 525 attgctaagttgactgaaaaggaattgggaaattatggaaatgagcaagtgtggagatct 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42011 attgctaagttgactgaaaaggaattgggaaattatggaaatgagcaagtgtggagatct 42070
Query: 585 tgtggtaagatgttcatccgtcaagagaagcaagcctacactgctgatttaaaccatgat 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42071 tgtggtaagatgttcatccgtcaagagaagcaagcctacactgctgatttaaaccatgat 42130
Query: 645 gaaagaatattggacgaacagataaaggcattggaacaaaagagacattacctacagacc 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42131 gaaagaatattggacgaacagataaaggcattggaacaaaagagacattacctacagacc 42190
Query: 705 acagtcgataacacggtagagagtttgagaagagtcattggaaa-taaatcaactactng 763
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 42191 acagtcgataacacggtagagagtttgagaagagtcattggaaattaaatcaactact-g 42249
Query: 764 agtc-gcatcgacagggttttttgtatggggtcaagcatgttgggaagatagtacccttn 822
|||| |||||||||||| ||||||||| |||||||||| ||||||||||||||||||
Sbjct: 42250 agtcggcatcgacaggggtttttgtat-gggtcaagcaatgtgggaagatagtaccctt- 42307
Query: 823 aaaagtcgtattcatcatagaatagagttaaagtatttagcagtggtaattgtatatata 882
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 42308 aaaagtcgtattcatcatagaatagagttaaagtatttagcagtggtaatgttatatata 42367
Query: 883 gttggactttaggaattctctatatcagaataccatgtgggctttat 929
|||| || ||| ||||||||||| |||||||| ||||||| ||||||
Sbjct: 42368 gttgtacattaagaattctctatttcagaata-catgtggtctttat 42413
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7555
Number of Sequences: 1807
Number of extensions: 7555
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)