BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZD07FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1020 1203 0.0
>3x_Contig1020
Length = 4879
Score = 1203 bits (607), Expect = 0.0
Identities = 717/747 (95%), Gaps = 5/747 (0%)
Strand = Plus / Plus
Query: 90 attagactaattacccactctttaggtggtgaagcttatt-tgaactttg-aaggtaacg 147
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 2528 attagactaattacccactctttaggtggtgaagcttattatgaactttgcaaggtaacg 2587
Query: 148 agtttggtcaccctgaatggttggatttccctaacgttaacaacggcgatagttaccatt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2588 agtttggtcaccctgaatggttggatttccctaacgttaacaacggcgatagttaccatt 2647
Query: 208 atgctagaaggcagttcaacttggtggatgaccctttgttgagataccaatacttgtatc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2648 atgctagaaggcagttcaacttggtggatgaccctttgttgagataccaatacttgtatc 2707
Query: 268 agtttgataaggctatgcaaactactgaaaagaattataaatggttgaatacaccacaag 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2708 agtttgataaggctatgcaaactactgaaaagaattataaatggttgaatacaccacaag 2767
Query: 328 cgtatgtctctttgaaacacgaagttgacaaggtcatcgcattcgaaagaaatggactct 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2768 cgtatgtctctttgaaacacgaagttgacaaggtcatcgcattcgaaagaaatggactct 2827
Query: 388 tgttcatcttcaatttccatccgacagaatccttcacagattatcgtattggagttaatg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2828 tgttcatcttcaatttccatccgacagaatccttcacagattatcgtattggagttaatg 2887
Query: 448 agccaggttgctaccgtatcgtattgaactcagacaagcatgaatacggtggctgggatc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2888 agccaggttgctaccgtatcgtattgaactcagacaagcatgaatacggtggctgggatc 2947
Query: 508 gtatcgatgagtcccaatccaagtattttactactgatttgaaatggaacgaaagaaaca 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2948 gtatcgatgagtcccaatccaagtattttactactgatttgaaatggaacgaaagaaaca 3007
Query: 568 aattcatccaggtttacattccaaaccgtaccgcattagttctcgcccttgattcaagag 627
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3008 atttcatccaggtttacattccaaaccgtaccgcattagttctcgcccttgattcaagag 3067
Query: 628 tgaggaatggaaatta-cccaataatacaaaaagcactgtttacctcataccaacttaac 686
|||||||||||||||| || |||||||||||| ||||| ||||||||||||||| |||
Sbjct: 3068 tgaggaatggaaattagccaaataatacaaaagcaactgtatacctcataccaactaaac 3127
Query: 687 caaagacattgaccggaagaatctcaatttcaaaaaaaaaaaaaaaaacttaggacacca 746
||||||||| ||| | ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3128 caaagacatagacggaaagaatctcaattccaaaaaaaaaaaaaaaaacttaggacacca 3187
Query: 747 cacatatgcttgcttaacattcctctaacttttaccaatcactttcaaaaaatatttaag 806
|||||||||| ||| | |||||||| ||| | || |||||| | |||||||| |||
Sbjct: 3188 cacatatgctagctaaccattcctcaaac-tataacaatcaactcaaaaaaata-ataaa 3245
Query: 807 gataaaataacctatttcaaaacatgt 833
|||||||||| ||| ||||||||||||
Sbjct: 3246 gataaaataaactaattcaaaacatgt 3272
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,099
Number of Sequences: 1807
Number of extensions: 18099
Number of successful extensions: 2823
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)