BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZD08FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1326 811 0.0
3x_Contig551 517 e-146
>3x_Contig1326
Length = 4875
Score = 811 bits (409), Expect = 0.0
Identities = 472/488 (96%), Gaps = 4/488 (0%)
Strand = Plus / Plus
Query: 317 tcatcaaatctat-cgtcac-ggaaagccaagcaagcacattggatgtaggcaaaaatgt 374
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tcatcaaatctattcgtcacaggaaagccaagcaagcacattggatgtaggcaaaaatgt 65
Query: 375 tttctggatttaattccttagccttatcgaaatcggcaccagcttctttgaagttttcaa 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 tttctggatttaattccttagccttatcgaaatcggcaccagcttctttgaagttttcaa 125
Query: 435 caacaaaatgcatttgaccgcgatgatagtaaacagcagagcagtttggatctaattcta 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 caacaaaatgcatttgaccgcgatgatagtaaacagcagagcagtttggatctaattcta 185
Query: 495 aagctttgtcaaagtattccttgtattggttggcttcacccttgtcagccataatcaaag 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 aagctttgtcaaagtattccttgtattggttggcttcacccttgtcagccataatcaaag 245
Query: 555 ccatgtagatgtaagtagaaggtcttgggttcaaagacaacgattcttccaggttaatat 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ccatgtagatgtaagtagaaggtcttgggttcaaagacaacgattcttccaggttaatat 305
Query: 615 gcgcggtaattggatcatttttgaagaacttgaaaatacccacatgttcgaaagcgatgg 674
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 306 gcgcggtaattggatcatttttgaagaacttgaaaatacccacatgttcgaaggcgatgg 365
Query: 675 cagcctttctctttcaagattcaatattctggagaagattctaattctttcttgtataac 734
||||||| |||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 366 cagccttcttcttcaaagattcatta-tctggagaagattctaattctttcttgtataac 424
Query: 735 tcgncagcctttgtgaattcttcatcagccatttcgtaacattccgttttgacatttgac 794
||| ||||||| ||||||||||||||||||| ||||||||| |||| |||||||||||
Sbjct: 425 tcggcagccttggtgaattcttcatcagccaattcgtaaca-tccggtttgacatttgta 483
Query: 795 caagtttt 802
||||||||
Sbjct: 484 caagtttt 491
>3x_Contig551
Length = 2723
Score = 517 bits (261), Expect = e-146
Identities = 263/264 (99%)
Strand = Plus / Plus
Query: 87 caacgaagttttcaacggttgggtttctaatcaaagcagtggccttaccaatcattggag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2460 caacgaagttttcaacggttgggtttctaatcaaagcagtggccttaccaatcattggag 2519
Query: 147 caataccgacgtgaatacctggtaaagcatcttccaacttgatggcaatatcgtattgct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2520 caataccgacgtgaatacctggtaaagcatcttccaacttgatggcaatatcgtattgct 2579
Query: 207 tgatggcagcatctagagagttcttagcagccaaaatttcggcataaaagtttggaactt 266
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2580 tgatggcagcatctagagagttcttagcagccaaaatttcggcatanaagtttggaactt 2639
Query: 267 ctggagcagttgggaactttcttctggcttcgctgaacaaagtttcacaatcatcaaatc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2640 ctggagcagttgggaactttcttctggcttcgctgaacaaagtttcacaatcatcaaatc 2699
Query: 327 tatcgtcacggaaagccaagcaag 350
||||||||||||||||||||||||
Sbjct: 2700 tatcgtcacggaaagccaagcaag 2723
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8117
Number of Sequences: 1807
Number of extensions: 8117
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 2
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)