BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZD08RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1554 1320 0.0
>3x_Contig1554
Length = 8957
Score = 1320 bits (666), Expect = 0.0
Identities = 744/761 (97%), Gaps = 8/761 (1%)
Strand = Plus / Minus
Query: 47 ctatgatgggtcacaaagttagagttctaccaggtgagaagactttgcgtttgcattatg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2151 ctatgatgggtcacaaagttagagttctaccaggtgagaagactttgcgtttgcattatg 2092
Query: 107 ccaatactggtgcttacaacgccgattttgatggtgatgaaatgaatatgcacttcccac 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2091 ccaatactggtgcttacaacgccgattttgatggtgatgaaatgaatatgcacttcccac 2032
Query: 167 aaaacgaaaatgcaaaagctgaagcattgaatctagccaatactgactctcaatacttga 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2031 aaaacgaaaatgcaaaagctgaagcattgaatctagccaatactgactctcaatacttga 1972
Query: 227 caccaacatccggttctccagtaagaggtcttatccaagatcacatttctgcaggtgttt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1971 caccaacatccggttctccagtaagaggtcttatccaagatcacatttctgcaggtgttt 1912
Query: 287 ggttaactagcaaagactcatttttcactagagaacaatatcagcagtatatttatggtt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1911 ggttaactagcaaagactcatttttcactagagaacaatatcagcagtatatttatggtt 1852
Query: 347 gtattcgtcctgaagatggacatgctactcgtaacaaattggtcactattcctccagcag 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1851 gtattcgtcctgaagatggacatgctactcgtaacaaattggtcactattcctccagcag 1792
Query: 407 tcatgaagcctgaacctttatggactggtaaacaaataattactacagttttactgaaca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1791 tcatgaagcctgaacctttatggactggtaaacaaataattactacagttttactgaaca 1732
Query: 467 cttgtcctgctaacatgccaggtatcaatttgaactccaagaacaagatcaagaatgaat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1731 cttgtcctgctaacatgccaggtatcaatttgaactccaagaacaagatcaagaatgaat 1672
Query: 527 attggggcaagtcttcggaagagaataatgttgttttcaaagatggtcaattattatgtg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1671 attggggcaagtcttcggaagagaataatgttgttttcaaagatggtcaattattatgtg 1612
Query: 587 gtattttagacaagtcacaatatggtgccctccaa--tcggtatcgttcatttcctacac 644
||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||
Sbjct: 1611 gtattttagacaagtcacaatatggtg-cctccaaattcggtatcgttcattccctacac 1553
Query: 645 gaagtatatggcccagacgtagctgctaaaagtg-tatcccgtctctgtagactattcac 703
||||||||||||||||||||||||||| |||||| ||||| |||| |||||||||||||
Sbjct: 1552 gaagtatatggcccagacgtagctgct-aaagtgttatccgttctcggtagactattcac 1494
Query: 704 aaactacatcactgctaccgcatttactttgtgtatggacgaattgcgtttaaca-ctga 762
||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||
Sbjct: 1493 aaactacatcactgctaccgcatttacttgtggtatggacgatttgcgtttaacagctga 1434
Query: 763 ggttaacaaatggag-aatgacattctt-aaacatccgttg 801
|| |||||||||||| |||||||||||| ||||||||||||
Sbjct: 1433 gggtaacaaatggagaaatgacattcttcaaacatccgttg 1393
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6049
Number of Sequences: 1807
Number of extensions: 6049
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)