BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZD09FM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1033 1134 0.0
>3x_Contig1033
Length = 4240
Score = 1134 bits (572), Expect = 0.0
Identities = 628/640 (98%), Gaps = 5/640 (0%)
Strand = Plus / Minus
Query: 87 atagaggaattatctgggtctttgcaggtactgttatttctttttctacaagaatgtatg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 atagaggaattatctgggtctttgcaggtactgttatttctttttctacaagaatgtatg 1105
Query: 147 aagatagagccacttatgatggccccctatgaagataacatgttagaactctatcttatc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1104 aagatagagccacttatgatggccccctatgaagataacatgttagaactctatcttatc 1045
Query: 207 tatgataagccaggtttactaggcttcctcaaaactaaatccaattacaatatagataaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 tatgataagccaggtttactaggcttcctcaaaactaaatccaattacaatatagataaa 985
Query: 267 gctattaaattttgtcaagaagagaataacttgcataatgagttgatatttttgtggagt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 gctattaaattttgtcaagaagagaataacttgcataatgagttgatatttttgtggagt 925
Query: 327 aagataggtgaaaatagaaaagcattatcgttaattatagaccgcctagatgacccaaaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 aagataggtgaaaatagaaaagcattatcgttaattatagaccgcctagatgacccaaaa 865
Query: 387 cttgcctttcaatttgtcaaggactcgcttgacaatgaattgtggaactttcttataaat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 cttgcctttcaatttgtcaaggactcgcttgacaatgaattgtggaactttcttataaat 805
Query: 447 tatagtctagacaggccgaagtttatcaaggctattttggacagctctgaactatttgaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tatagtctagacaggccgaagtttatcaaggctattttggacagctctgaactatttgaa 745
Query: 507 gacgaaattgccacagtggtcgataagattcctgataatatcgaagttgaagggctc-aa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 744 gacgaaattgccacagtggtcgataagattcctgataatatcgaagttgaagggctcaaa 685
Query: 566 aaatcgttagaagatattgcaactaataatgagtt-aaattgggagtcgtgagtagcatt 624
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 684 aaatcgttagaagatattgcaactaataatgagttaaaattgggagtcgtgagtagcatt 625
Query: 625 ttc-aaattgttgatgatgagacttaggagatggtaccggaaatttttgattatttcgaa 683
||| |||||||||||||||||||| ||||||||||| ||| |||||||||||||| ||
Sbjct: 624 ttcaaaattgttgatgatgagactaaggagatggtagcgg-aatttttgattattcgaaa 566
Query: 684 gaaaggtaaaatctttcattacttaataataggtgccgag 723
||||||||||||||||||| ||| ||| ||||||||||||
Sbjct: 565 gaaaggtaaaatctttcataactaaat-ataggtgccgag 527
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7934
Number of Sequences: 1807
Number of extensions: 7934
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)