BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZD09RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1669 1267 0.0
>3x_Contig1669
Length = 15503
Score = 1267 bits (639), Expect = 0.0
Identities = 681/691 (98%), Gaps = 5/691 (0%)
Strand = Plus / Plus
Query: 35 agcttatatttagtctcagagtccagtttcttcgaactggcgtttctcttaaattgtgac 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6031 agcttatatttagtctcagagtccagtttcttcgaactggcgtttctcttaaattgtgac 6090
Query: 95 atccgggattatttctattgataaaaactgtgcgaacctaaattattgctagcaaaagag 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6091 atccgggattatttctattgataaaaactgtgcgaacctaaattattgctagcaaaagag 6150
Query: 155 ggaaggcgatcgttattgtaataatctgtaattggattgcgtgagtagtagtagttctct 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6151 ggaaggcgatcgttattgtaataatctgtaattggattgcgtgagtagtagtagttctct 6210
Query: 215 tgaagtagttctgattgcttgttgttaatcttagaagtttaagcaagtatgcaaattttt 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6211 tgaagtagttctgattgcttgttgttaatcttagaagtttaagcaagtatgcaaattttt 6270
Query: 275 tataatgctttattggaaaatgttgagtataatttctttccaaaaaaagtacaattttag 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6271 tataatgctttattggaaaatgttgagtataatttctttccaaaaaaagtacaattttag 6330
Query: 335 tatctgctcgcaacaagaaaagcacgcgagataggtatcgttacaaaaatggaactctta 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6331 tatctgctcgcaacaagaaaagcacgcgagataggtatcgttacaaaaatggaactctta 6390
Query: 395 aacgccgtttcaatccttgaactctttctctggagtattaagctatctaacttaacaata 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6391 aacgccgtttcaatccttgaactctttctctggagtattaagctatctaacttaacaata 6450
Query: 455 tttgtttcctattttcccagatctttcgaaatcaaattttacttttatcgaaaatgttct 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6451 tttgtttcctattttcccagatctttcgaaatcaaattttacttttatcgaaaatgttct 6510
Query: 515 tatttcaatttttctattggtggcaatagggtaaaaaagganggagggtaatcagaatat 574
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 6511 tatttcaatttttctattggtgacaatagggtaaaaaaggagggagggtaatcagaatat 6570
Query: 575 tctattctagtactgcaatgaggagatagaaacagtgagatggagctggcacgaagttct 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6571 tctattctagtactgcaatgaggagatagaaacagtgagatggagctggcacgaagttct 6630
Query: 635 acangaatatgacagcagtcattatactggaccttcttgtgcttttagntaatttaggtg 694
||| |||||||||||||||||||||||||||||||||||||| ||||| | |||||||||
Sbjct: 6631 acaagaatatgacagcagtcattatactggaccttcttgtgc-tttagtt-atttaggtg 6688
Query: 695 atatggtttggaattattatattgcagaatt 725
||||| || ||||||||||| |||||||||
Sbjct: 6689 atatg--tttgaattattata-tgcagaatt 6716
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7405
Number of Sequences: 1807
Number of extensions: 7405
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)