BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZD10RM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1013 1285 0.0
>3x_Contig1013
Length = 5070
Score = 1285 bits (648), Expect = 0.0
Identities = 654/656 (99%)
Strand = Plus / Plus
Query: 47 gggtatgagacacctcctaccctgagtcctgatgaattcgccggaatttcgccaacgaag 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1386 gggtatgagacacctcctaccctgagtcctgatgaattcgccggaatttcgccaacgaag 1445
Query: 107 caagctttcaagaagatgagattcttcttctcaaggcattggcatgggatggatcaagga 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1446 caagctttcaagaagatgagattcttcttctcaaggcattggcatgggatggatcaagga 1505
Query: 167 gaaccagatcattgctattcaactaacaatgatgatcagtcagtgggcaactactcgtgt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1506 gaaccagatcattgctattcaactaacaatgatgatcagtcagtgggcaactactcgtgt 1565
Query: 227 tacaacaagtataagactgacggtcaacaattagaacgtttattcaacgaagctgttgtc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1566 tacaacaagtataagactgacggtcaacaattagaacgtttattcaacgaagctgttgtc 1625
Query: 287 gataaaagaccgcctgtaacaagggacgatgctgtgaggaaaatggcaccatttgaggct 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1626 gataaaagaccgcctgtaacaagggacgatgctgtgaggaaaatggcaccatttgaggct 1685
Query: 347 atggaccccagatttgccaacaattggatgaaaaatattcaggactttaacattacattc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1686 atggaccccagatttgccaacaattggatgaaaaatattcaggactttaacattacattc 1745
Query: 407 agtcctgttgatacagaacctagcattgtgatcccttcatcttctgatgttctaaaaacg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1746 agtcctgttgatacagaacctagcattgtgatcccttcatcttctgatgttctaaaaacg 1805
Query: 467 aagatagcgacagcgacagaaaagggtcagcgcgaaggtcagttatctccggacaaccat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1806 aagatagcgacagcgacagaaaagggtcagcgcgaaggtcagttatctccggacaaccat 1865
Query: 527 tccaaatctagtggagtatacagagcattggcaaatcaagctatttcttattgcaactcg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1866 tccaaatctagtggagtatacagagcattggcaaatcaagctatttcttattgcaactcg 1925
Query: 587 ggttcagcgacacagaaatccagtagttacgaatatggtaatccttctgctttgccagat 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1926 ggttcagcgacacagaaatccagtagttacgaatatggtaatccttctgctttgccagat 1985
Query: 647 ctcttatacggtttagagagtctaccaacggtctcaagttaagattgttcaacacc 702
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 1986 ctcttatacggtttagagagtctaccaacggtctcaggtaaagattgttcaacacc 2041
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6247
Number of Sequences: 1807
Number of extensions: 6247
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)