BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC45ZD11RM1.SCF screened BAC_end
         (976 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1451                                                        1384   0.0  

>3x_Contig1451 
          Length = 8346

 Score = 1384 bits (698), Expect = 0.0
 Identities = 793/811 (97%), Gaps = 11/811 (1%)
 Strand = Plus / Minus

                                                                        
Query: 52   atagccccaaaggcttcaggactctggacttgagaatatatacctcaacaagagttggag 111
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3592 atagccccaaatgcttcaggactctggacttgagaatatatacctcaacaagagttggag 3533

                                                                        
Query: 112  tgtggttcattgctttgtcagcatatgcattagcctgctcgaactgctttctatgcaaat 171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3532 tgtggttcattgctttgtcagcatatgcattagcctgctcgaactgctttctatgcaaat 3473

                                                                        
Query: 172  aatgtagagccaaaaagtaagttgtccaaacaaattggattggttgatcagtcgatgata 231
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3472 aatgtagagccaaaaagtaagttgtccaaacaaattggattggttgatcagtcgatgata 3413

                                                                        
Query: 232  gctcagcataataaggtaatacaatactttcaacaatatccggaataccttccttcttgt 291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3412 gctcagcataataaggtaatacaatactttcaacaatatccggaataccttccttcttgt 3353

                                                                        
Query: 292  aaagaggtttgatgttattgaatgtggctggaacaccgcgatttaactgcgttatgatat 351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3352 aaagaggtttgatgttattgaatgtggctggaacaccgcgatttaactgcgttatgatat 3293

                                                                        
Query: 352  aatcattgagtttcgcggttaattctaccttatctttgaggaatgtgagcggaatgaatt 411
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3292 aatcattgagtttcgcggttaattctaccttatctttgaggaatgtgagcggaatgaatt 3233

                                                                        
Query: 412  taggaggctccgatttagggtaaaatatagccaacttttcatataaagctttcctcaact 471
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3232 taggaggctccgatttagggtaaaatatagccaacttttcatataaagctttcctcaact 3173

                                                                        
Query: 472  tctcatttccttgaattccaagtgaaacttccaatagcctgtaatatctgaaattgtctg 531
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3172 tctcatttccttgaattccaagtgaaacttccaatagcctgtaatatctgaaattgtctg 3113

                                                                        
Query: 532  gacttctcttaatcaaagttctgtacacaatagaggcttccttagaccgaccaagtttca 591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3112 gacttctcttaatcaaagttctgtacacaatagaggcttccttagaccgaccaagtttca 3053

                                                                        
Query: 592  ttaaaatagaagctttcctctctaacc-gccatatctatcatanacatcgtcggaaatct 650
            ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 3052 ttaaaatagaagctttcctctctaaccagccatatctatcataaacatcgtcggaaatct 2993

                                                                        
Query: 651  tttccaaatgctctaaaactctttccaaggattctttatcgntgcctgccttcttgtac- 709
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 2992 tttccaaatgctctaaaactctttccaaggattctttatcgttgcctgccttcttgtaca 2933

                                                                        
Query: 710  aaagatcattcttgtacatgatacattncgttgntctcatacattttctgggtca-ccca 768
            ||||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||| ||||
Sbjct: 2932 aaagatcattcttgtacatgatacatt-cgttgttctcataca-tttctggttcacccca 2875

                                                                        
Query: 769  acttgccttcaagcaagctctttaaatgtcgaaaagagtatttgattgcgtcttgcgtaa 828
            |||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||| |
Sbjct: 2874 acttgccttc-agcaagctcttcaaatgtcg-aaagagta-ttgattgcgtcttgcgt-a 2819

                                           
Query: 829  cccccattcaaaatcttgtgcttatggccaa 859
            | ||||||| ||||||||||| |||||||||
Sbjct: 2818 cgcccattc-aaatcttgtgc-tatggccaa 2790


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7476
Number of Sequences: 1807
Number of extensions: 7476
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 976
length of database: 10,358,551
effective HSP length: 16
effective length of query: 960
effective length of database: 10,329,639
effective search space: 9916453440
effective search space used: 9916453440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)