BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZD12FM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1473 1120 0.0
>3x_Contig1473
Length = 8041
Score = 1120 bits (565), Expect = 0.0
Identities = 619/632 (97%), Gaps = 5/632 (0%)
Strand = Plus / Plus
Query: 86 ctacatcataacccttgtggatcaaccaacgaggggattcaggtaagaagaataaaccaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4458 ctacatcataacccttgtggatcaaccaacgaggggattcaggtaagaagaataaaccaa 4517
Query: 146 caaataagatggtagaaaataccaaagaggaacctaacatatatctccaaccacctttga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4518 caaataagatggtagaaaataccaaagaggaacctaacatatatctccaaccacctttga 4577
Query: 206 catcgaagaaaatgacaccaatgacataaccaaccaactcaccaagggcaatattgaatt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4578 catcgaagaaaatgacaccaatgacataaccaaccaactcaccaagggcaatattgaatt 4637
Query: 266 gatacaacgaaactaaggaaccacgcacggtagatgggacagattcagcaatataaacac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4638 gatacaacgaaactaaggaaccacgcacggtagatgggacagattcagcaatataaacac 4697
Query: 326 caacaccaccaccttcaataccgacaccaacaccgatcaagaatctgcctgcatacattg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4698 caacaccaccaccttcaataccgacaccaacaccgatcaagaatctgcctgcatacattg 4757
Query: 386 tatgaacatcctgagcagcggcacacaaaataccaccaatggtataaaaaatacatgaga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4758 tatgaacatcctgagcagcggcacacaaaataccaccaatggtataaaaaatacatgaga 4817
Query: 446 tcactaaggcaacttttctaccgaaatattcacttaatggagttaacaagatagaaccac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4818 tcactaaggcaacttttctaccgaaatattcacttaatggagttaacaagatagaaccac 4877
Query: 506 cgaccgcacccaaaggcattaaagaggaaatcaaggaatcttcatcggaagtcaatttca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4878 cgaccgcacccaaaggcattaaagaggaaatcaaggaatcttcatcggaagtcaatttca 4937
Query: 566 acgatgccttcataccataactggcacctgaaatgttcgattgaatcacacctgac-aaa 624
||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||
Sbjct: 4938 acgatgccttcataccataactggcacctgaaatggtcgattgatccacacctgacaaaa 4997
Query: 625 tacctgcaaatgatgcgaaaaaacccaagcata--taccatatacgttttatttggagaa 682
||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||
Sbjct: 4998 tacctgcaaatgatgcgaaaaaa-ccaagcataataaccatatacgttttattt-gagaa 5055
Query: 683 agtcacttcacaaaattccatttttttcatac 714
|||||||||||||||||||| || ||||||
Sbjct: 5056 gttcacttcacaaaattccattcttctcatac 5087
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,413
Number of Sequences: 1807
Number of extensions: 13413
Number of successful extensions: 127
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)