BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC45ZE01FM1.SCF screened BAC_end
         (922 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1637                                                         731   0.0  

>3x_Contig1637 
          Length = 14855

 Score =  731 bits (369), Expect = 0.0
 Identities = 447/469 (95%), Gaps = 3/469 (0%)
 Strand = Plus / Plus

                                                                       
Query: 290 agcccgtctccactctaatattcgaatcgtgaaaaaccgttgattttgacccctctcttc 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4   agcccgtctccactctaatattcgaatcgtgaaaaaccgttgattttgacccctctcttc 63

                                                                       
Query: 350 caaatcgaaaaaaagtaagcagcggagaaaataagacactctctcattgaaagaattcaa 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  caaatcgaaaaaaagtaagcagcggagaaaataagacactctctcattgaaagaattcaa 123

                                                                       
Query: 410 ttgttcaaacctgttttcacatacacatatataaaggattgtgtgttcacaattggtgca 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ttgttcaaacctgttttcacatacacatatataaaggattgtgtgttcacaattggtgca 183

                                                                       
Query: 470 acttggtgggctagatggcatcttcgatcagtgctgcaaaaactgacaattgtggtactg 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 acttggtgggctagatggcatcttcgatcagtgctgcaaaaactgacaattgtggtactg 243

                                                                       
Query: 530 ataatatagcaactggacggtcgatgggtcaaggattggttgcgggagaggagatagat- 588
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| 
Sbjct: 244 ataatatagcaactggacggtcgatgggtcaaggattggttgcggaggaggagatagata 303

                                                                       
Query: 589 aagtactcaagcaggatgtccgagatgcagtgacaagcacagctggcacggcaagctgtc 648
           |||||||||||||||||||| ||||||||||||||   |||||||||||||| |||||||
Sbjct: 304 aagtactcaagcaggatgtcggagatgcagtgacagcaacagctggcacggc-agctgtc 362

                                                                       
Query: 649 gctgccgtaacgtctggttctgtcactgtaagttcgggcgtgaccttccggttgtagttt 708
           ||||||||| ||||||||||||||||||| ||||||||||||| | ||||||||||||| 
Sbjct: 363 gctgccgtagcgtctggttctgtcactgtcagttcgggcgtgaac-tccggttgtagttc 421

                                                            
Query: 709 tagaatccgcgctttagattgggaagtttctttgacccgacatggactt 757
           ||||  | ||||| |||| | ||||| ||||| || |||||||||||||
Sbjct: 422 tagatccggcgctatagacttggaaggttcttcgagccgacatggactt 470


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5643
Number of Sequences: 1807
Number of extensions: 5643
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)