BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZE02FM1.SCF screened BAC_end
(982 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1728 1057 0.0
>3x_Contig1728
Length = 20685
Score = 1057 bits (533), Expect = 0.0
Identities = 578/590 (97%), Gaps = 3/590 (0%)
Strand = Plus / Plus
Query: 88 tgaaggtgcgggctatgtggaaagaaaataggcgctatttctcatctaggtggttttatg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 tgaaggtgcgggctatgtggaaagaaaataggcgctatttctcatctaggtggttttatg 868
Query: 148 caattgacattcctaaaaccaaaccttttgaatcagagtatgtaccaaaaacggcacctt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 caattgacattcctaaaaccaaaccttttgaatcagagtatgtaccaaaaacggcacctt 928
Query: 208 taaaatttcaaccgttctccaaggtcgactccaaacggattgaggacctctatacccaga 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 taaaatttcaaccgttctccaaggtcgactccaaacggattgaggacctctatacccaga 988
Query: 268 agaatttcagtaggaaacttgatgttaatgaggatcatcttttcgaggttgatctggaaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 agaatttcagtaggaaacttgatgttaatgaggatcatcttttcgaggttgatctggaaa 1048
Query: 328 aagtttctatgaatccaatctattgngacggaccatcctatgaaatacgaagaggtatct 387
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1049 agttttctatgaatccaatctattgggacggaccatcctatgaaatacgaagaggtatct 1108
Query: 388 ggtttgatgaccagaataggccgttgagtcatgacttaaccaaggctattgaagaattac 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1109 ggtttgatgaccagaataggccgttgagtcatgacttaaccaaggctattgaagaattac 1168
Query: 448 atcagcagtggctctctagggacaaagagaaatctanaaccactgaacttcgtgatattt 507
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1169 atcagcagtggctctctagggacaaagagaaatctaaaaccactgaacttcgtgatattt 1228
Query: 508 tccgattaccaaaagattcgaaatggaaatacgttatgttttttgaagacgataggaccg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1229 tccgattaccaaaagattcgaaatggaaatacgttatgttttttgaagacgataggaccg 1288
Query: 568 cttttttgttgccagatatctacggtggacatttacagcttactattctancgagcttaa 627
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||| | |
Sbjct: 1289 cttttttgttgccagatatctacggtggacatttacagcttactatcctacggagc-tca 1347
Query: 628 gtggctaaactgattcaattgggttgcatccaaagcttaccaagggctat 677
|||||| |||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 1348 gtggctcaactgattcaattggg-tgcatcc-aagcttaccaagggctat 1395
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7450
Number of Sequences: 1807
Number of extensions: 7450
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 982
length of database: 10,358,551
effective HSP length: 16
effective length of query: 966
effective length of database: 10,329,639
effective search space: 9978431274
effective search space used: 9978431274
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)