BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZE02RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig344 1628 0.0
>3x_Contig344
Length = 1970
Score = 1628 bits (821), Expect = 0.0
Identities = 857/865 (99%), Gaps = 3/865 (0%)
Strand = Plus / Plus
Query: 49 tcagtgttagaat-atatttgaatcttt-aaactgcttgaagtattctactctcttctca 106
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1004 tcagtgttagaatcatatttgaatctttcaaactgcttgaagtattctactctcttctca 1063
Query: 107 atcctttctaaaattgttaactcattatcatgtagttgcgatagtctcttctgcaaaatg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1064 atcctttctaaaattgttaactcattatcatgtagttgcgatagtctcttctgcaaaatg 1123
Query: 167 ttcactgtgttgattatatcattcaatttttctattgattgctcatccttatttggatct 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1124 ttcactgtgttgattatatcattcaatttttctattgattgctcatccttatttggatct 1183
Query: 227 tcaagtaaagtgttcaaagtagcgaattgtccctgtagctctactgaatagcttgtatat 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1184 tcaagtaaagtgttcaaagtagcgaattgtccctgtagctctactgaatagcttgtatat 1243
Query: 287 aggttgttgaatttatcccagtttcgctttaacaattcggaaggaatgttaaactgctgc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1244 aggttgttgaatttatcccagtttcgctttaacaattcggaaggaatgttaaactgctgc 1303
Query: 347 tggtttaattttaggtgaaaatcgacattaggttcgtttaacgaagtcataatgacatct 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1304 tggtttaattttaggtgaaaatcgacattaggttcgtttaacgaagtcataatgacatct 1363
Query: 407 aaaggctttttggtagatttaccgtcaccagtattacactgattgatccagtttgtcagt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1364 aaaggctttttggtagatttaccgtcaccagtattacactgattgatccagtttgtcagt 1423
Query: 467 tatttggttcatccctaaagattaaggtatattgtgaaaacccctttcaattttcttatg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1424 tatttggttcatccctaaagattaaggtatattgtgaaaacccctttcaattttcttatg 1483
Query: 527 caatttgatgcagaaatacaaagatatagttaccatgaatgaaatacatcaaccggtacg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1484 caatttgatgcagaaatacaaagatatagttaccatgaatgaaatacatcaaccggtacg 1543
Query: 587 ctggaaaaaaaaaattgctaaagtcgagttgatgcagtaccaactggagggtaggaatat 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1544 ctggaaaaaaaaaattgctaaagtcgagttgatgcagtaccaactggagggtaggaatat 1603
Query: 647 caggcgaaacattacagacgtttgtttatacactgttagtgaaaagataaataccaatgg 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1604 caggcgaaacattacagacgtttgtttatacactgttagtgaaaagataaataccaatgg 1663
Query: 707 ctaagtgttgcgcctaaagtttaagacccagaaagcatcaaacagacgaggacagaatat 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1664 ctaagtgttgcgcctaaagtttaagacccagaaagcatcaaacagacgaggacagaatat 1723
Query: 767 attacattttaataaatttatttagaaagcttcttgctcataatctagccaagaaagaat 826
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1724 attacattttaataattttatttagaaagctccttgctcataatctagccaagaaagaat 1783
Query: 827 gattggaaccattgaatgatttaactgccagatgctgaactggtcatac-aaaagtgtga 885
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 1784 gattggaaccattgaatgatttaactgcgagatgctgaactggtcatacaaaaagtgtga 1843
Query: 886 tttacacacaacttaccttaataat 910
| ||||||||||||||| |||||||
Sbjct: 1844 tatacacacaacttaccataataat 1868
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8815
Number of Sequences: 1807
Number of extensions: 8815
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)