BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZE03RM1.SCF screened BAC_end
(898 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1568 1558 0.0
>3x_Contig1568
Length = 12470
Score = 1558 bits (786), Expect = 0.0
Identities = 828/838 (98%), Gaps = 4/838 (0%)
Strand = Plus / Plus
Query: 40 aataagggcgtaaaaaaccttgaaaccagataatcttggttccacgaagttcaccactgc 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6223 aataagggcgtaaaaaaccttgaaaccagataatcttggttccacgaagttcaccactgc 6282
Query: 100 ccaagttgcaatgaaaggattggatattataagcaagacaaggttttttatcgacagcct 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6283 ccaagttgcaatgaaaggattggatattataagcaagacaaggttttttatcgacagcct 6342
Query: 160 tagattactctcgataattgtcgtagttcttgtcattgggaatgcaagcaagcccatcac 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6343 tagattactctcgataattgtcgtagttcttgtcattgggaatgcaagcaagcccatcac 6402
Query: 220 aatcgcaagtgagaaattcaatactaatagagaagtcaaaacaatggccatatagatgta 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6403 aatcgcaagtgagaaattcaatactaatagagaagtcaaaacaatggccatatagatgta 6462
Query: 280 tgcgaaagctttaaatctgtatgagaaaggttcttggattcttagtctagttctcgaaag 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6463 tgcgaaagctttaaatctgtatgagaaaggttcttggattcttagtctagttctcgaaag 6522
Query: 340 cagcggaagcaccgaaaatataccactgagtcccaaaaggactcgaggtagagggaaata 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6523 cagcggaagcaccgaaaatataccactgagtcccaaaaggactcgaggtagagggaaata 6582
Query: 400 aacgaatagttgcgaagtagcaaaggcaaataccaaagaaatgcagaatgttagaattga 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6583 aacgaatagttgcgaagtagcaaaggcaaataccaaagaaatgcagaatgttagaattga 6642
Query: 460 ccaaatgttgtatatagacagcaacggaagttcaccatatttgttattcaaaatttgatt 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6643 ccaaatgttgtatatagacagcaacggaagttcaccatatttgttattcaaaatttgatt 6702
Query: 520 taatgctgcgaatacaaaggccaccgagacagccaccgcagtcgccaaataagtcccgat 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6703 taatgctgcgaatacaaaggccaccgagacagccaccgcagtcgccaaataagtcccgat 6762
Query: 580 tgatataaaataccgaggtgctagtagaagataaaagaagaatgattgatggaatttttc 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6763 tgatataaaataccgaggtgctagtagaagataaaagaagaatgattgatggaatttttc 6822
Query: 640 aagcaagttattgacagatctagacaatgcctctggcacacgaccaaatgttgtgatgtc 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6823 aagcaagttattgacagatctagacaatgcctctggcacacgaccaaatgttgtgatgtc 6882
Query: 700 gtgtggtccatcaatccccttagcctttaaagtcaatgattggattctncaaaccact-a 758
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct: 6883 gtgtggtccatcaatccccttagcctttaaagtcaatgattggattctcc-aaccactaa 6941
Query: 759 atgcttcattaccgtnacagttcttgattccagaaagtactgagtcttttattccc-aaa 817
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 6942 atgcttcattaccgtaacagttcttgattccagaaagtactgagtcttttattcccaaaa 7001
Query: 818 gcatcgttttcattctcgagttatagtcattnctatc-agntctgagaatgccaaacc 874
|||||||||||| |||||||||||||||||| ||||| || |||||||||| ||||||
Sbjct: 7002 gcatcgttttcaatctcgagttatagtcatttctatcaagttctgagaatggcaaacc 7059
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5974
Number of Sequences: 1807
Number of extensions: 5974
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)