BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZE04FM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig202 846 0.0
3x_Contig1321 285 8e-77
>3x_Contig202
Length = 1756
Score = 846 bits (427), Expect = 0.0
Identities = 559/592 (94%), Gaps = 9/592 (1%)
Strand = Plus / Plus
Query: 309 gcaattctattgttttttagattgagagtccgtaggtttgccatacctgacaaatcggga 368
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 gcaattctattgtcttttagattgagagtccgtaggtt-gccatacctgacaaatcggga 59
Query: 369 acagcttgaattttattgttggataggttcatcttcgccaacttacttagttcgttgatg 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 acagcttgaattttattgttggataggttcatcttcgccaacttacttagttcgttgatg 119
Query: 429 gaaagtggaagtgaatttatcttattgtatgaaagatcaacctgtaataagtttgtacac 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gaaagtggaagtgaatttatcttattgtatgaaagatcaacctgtaataagtttgtacac 179
Query: 489 ctattgataacttcggggtacgccgtaaatgcattggaggagatatccaacaactgncag 548
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 180 ctattgataacttcggggtacgccgtaaatgcattggaggagatatccaacaactgcaag 239
Query: 549 ttcttgagattctt-aatccagatggaagtctgtctaactggttacattgaaggttcaaa 607
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ttcttgagattcttaaatccagatggaagtctgtctaactggttacattgaaggttcaaa 299
Query: 608 atagtaagattggacaacttggagatggattncnggtacccttttgattaag-ttctctc 666
||||||||||||||||||||||||||||||| | |||||||||||||| ||| |||||||
Sbjct: 300 atagtaagattggacaacttggagatggatt-ccggtacccttttgataaagtttctctc 358
Query: 667 taggtnccagggaactaaatcataagcctgttgtatgttggctgggaacctagatgcctt 726
||||| | ||| ||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 359 taggtccaaggaaactaaatcataagcctgtgtaatgttggctgggaacctagatgccct 418
Query: 727 gacattaaccattcttcaaactggatagcttaacggccctttcaatgaaatcgatagg-a 785
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 419 gacattaaccattc-tcaaactggatagcttaacggcactttcaatgaaatcgataggta 477
Query: 786 aaaagatattaccggtattagaaac-tccaaactttcgattt-aggaggttgctgattaa 843
||||||||||| || |||||||||| |||||||| ||||||| || || ||||||| ||
Sbjct: 478 aaaagatattagcgttattagaaacatccaaactctcgatttcagaagtatgctgataaa 537
Query: 844 aaatgataggaggtgtagtttagatccatgtttttcaagcaaacatgaatga 895
|||||||||||||||||||| || ||||||||| ||||| |||||||||||
Sbjct: 538 aaatgataggaggtgtagttaag-tccatgtttctcaagtcaacatgaatga 588
>3x_Contig1321
Length = 8217
Score = 285 bits (144), Expect = 8e-77
Identities = 151/152 (99%), Gaps = 1/152 (0%)
Strand = Plus / Plus
Query: 86 ttctaaagttttcaaaaaatcgataggtaaactggatagttttgccttgtttagagataa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7678 ttctaaagttttcaaaaaatcgataggtaaactggatagttttgccttgtttagagataa 7737
Query: 146 acttgtaaggttagataacacattacctctatagtcgaacgaagtaacaggattttctgt 205
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 7738 acttgtaaggttagataacacattacctctatagtcgaacg-agtaacaggattttctgt 7796
Query: 206 caaatcgcagcttcttagtttaggtagtgaat 237
||||||||||||||||||||||||||||||||
Sbjct: 7797 caaatcgcagcttcttagtttaggtagtgaat 7828
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5951
Number of Sequences: 1807
Number of extensions: 5951
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 2
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)