BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZE04RM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1612 0.0
>3x_Contig1794
Length = 36744
Score = 1612 bits (813), Expect = 0.0
Identities = 855/865 (98%), Gaps = 4/865 (0%)
Strand = Plus / Minus
Query: 47 ttgtctcgatagaagcgctcacagtaggaggttttaatttaattttcaatttggatggat 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4227 ttgtctcgatagaagcgctcacagtaggaggttttaatttaattttcaatttggatggat 4168
Query: 107 caccaagtaacacttcttcgtatatcctgtaaagagatgaaggatattgattccaaacac 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4167 caccaagtaacacttcttcgtatatcctgtaaagagatgaaggatattgattccaaacac 4108
Query: 167 gttttaacaactgcttagcttcttcaatgcaggacaatttccaataagaatatacggcag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4107 gttttaacaactgcttagcttcttcaatgcaggacaatttccaataagaatatacggcag 4048
Query: 227 tcattcccagtcctaaagtaaaccactgtttgtataggttgaataaaggattctttatca 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4047 tcattcccagtcctaaagtaaaccactgtttgtataggttgaataaaggattctttatca 3988
Query: 287 tttgaataatgtactgatattcatcattggcagccaaataatgatccatgaaatatcttg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3987 tttgaataatgtactgatattcatcattggcagccaaataatgatccatgaaatatcttg 3928
Query: 347 ctcctaaaggatcttccaaaggtgataaagaaagaagagttttacaccactgagcggctg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3927 ctcctaaaggatcttccaaaggtgataaagaaagaagagttttacaccactgagcggctg 3868
Query: 407 ttgaaacggcacctctttgagatacgatttgaatatatctcatgatagccaaataaaact 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3867 ttgaaacggcacctctttgagatacgatttgaatatatctcatgatagccaaataaaact 3808
Query: 467 gtctgttgtaaaaatatatgtagggaagttggaaatccttagcagtgaactcaatcccat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3807 gtctgttgtaaaaatatatgtagggaagttggaaatccttagcagtgaactcaatcccat 3748
Query: 527 ttttcaaacaacggtcgaagacaaatagtgcacgttcaaccaaaccattactgttagatt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3747 ttttcaaacaacggtcgaagacaaatagtgcacgttcaaccaaaccattactgttagatt 3688
Query: 587 tgtcaccttgccttacgcatatcaaggcaacttgtaagagccctggtacatgataaggga 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3687 tgtcaccttgccttacgcatatcaaggcaacttgtaagagccctggtacatgataaggga 3628
Query: 647 attgcgaagatattattgatattagtgcttcatgatcagggtgtaagactgtactcangt 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 3627 attgcgaagatattattgatattagtgcttcatgatcagggtgtaagactgtactcaggt 3568
Query: 707 agaattcggttaaagcctttttgctattggtatcgtttaaagcatcgaatttataataag 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3567 agaattcggttaaagcctttttgctattggtatcgtttaaagcatcgaatttataataag 3508
Query: 767 taaaatgcttagaccatttgcgttcaacatcgtctttgatgacagcatccnaatccaaag 826
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3507 taaaatgcttagaccatttgcgttcaacatcgtctttgatgacagcatcccaatccaaag 3448
Query: 827 gacgctgccatctcgaccattttgntagatcgtcngtagac-actttttcaaga-gaatc 884
|||||||||||||||||||||||| ||||||||| ||||| |||||||||||| ||||
Sbjct: 3447 gacgctgccatctcgaccattttgttagatcgtcgttagacaactttttcaagatgaatt 3388
Query: 885 ct-cacgtactgtt-gtagccagtc 907
|| ||||||||||| ||||||||||
Sbjct: 3387 ctccacgtactgttggtagccagtc 3363
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6812
Number of Sequences: 1807
Number of extensions: 6812
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)