BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZE05FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1739 1100 0.0
>3x_Contig1739
Length = 22061
Score = 1100 bits (555), Expect = 0.0
Identities = 673/706 (95%), Gaps = 5/706 (0%)
Strand = Plus / Plus
Query: 202 ttttctcaaatgctagcatgtacatgggcaaagttttcaaagaatctggtaagattaatt 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10425 ttttctcaaatgctagcatgtacatgggcaaagttttcaaagaatctggtaagattaatt 10484
Query: 262 gccccccagaagaaccgccacacagtgctctgtattgtgtaaagatttcaatgatcttgc 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10485 gccccccagaagaaccgccacacagtgctctgtattgtgtaaagatttcaatgatcttgc 10544
Query: 322 ggtcaatgttcttcctaatttcattgaaattacagtcttccaatgtggctagcacatctt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10545 ggtcaatgttcttcctaatttcattgaaattacagtcttccaatgtggctagcacatctt 10604
Query: 382 tgatcattatgctactcaccacatcttggtttataaacttgaagacttcgattacgttcg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10605 tgatcattatgctactcaccacatcttggtttataaacttgaagacttcgattacgttcg 10664
Query: 442 agttgacagctgcattagtattaattgcacgtactttacgtacaccatcgatatcagtat 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10665 agttgacagctgcattagtattaattgcacgtactttacgtacaccatcgatatcagtat 10724
Query: 502 acaatagagctgcttggaagcatatatcttctccgacctttagagtgtcatcgtacttga 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10725 acaatagagctgcttggaagcatatatcttctccgacctttagagtgtcatcgtacttga 10784
Query: 562 atagcacgtcgaacttttgatctctggtgagtacagggattacagggtcctcatcagtat 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10785 atagcacgtcgaacttttgatctctggtgagtacagggattacagggtcctcatcagtat 10844
Query: 622 tctttacactctccgaaatatagttgtaaactgacagtncggaggaacaacgcac-ttta 680
||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 10845 tctttacactctccgaataatagttgtaaactgacagtccggaggaacaacgcactttta 10904
Query: 681 gcataccttgatacccgactgtgcatttcacactcccttaaatgtcattaacaaaattgg 740
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 10905 gcataccttgatacccgactgtgcatttcacactccctaaaatgtcattaacaaatttga 10964
Query: 741 aatcatccttattgatggtgaaattcgaatactggtgtagatgcccataggttgc-atta 799
| ||||||||||||||| ||||||||||||| ||||||||||||||| ||||||| ||||
Sbjct: 10965 attcatccttattgatgttgaaattcgaatagtggtgtagatgcccagaggttgcaatta 11024
Query: 800 cagggttaagaagttattggcagataccatatttgctggaaaagtaccgaaagaattttt 859
||||| ||||| ||||||| |||| | |||| ||||| | ||||| ||||| || | |
Sbjct: 11025 caggg-taagatgttattgcaagat-cgatatatgctgtagaagtaacgaaaagatctat 11082
Query: 860 tccattccaggactttcagaaaatcctgacctaatttcttggaaaa 905
|||| |||||||| |||| ||||| ||| ||||||||||| ||||
Sbjct: 11083 tccaatccaggac-ttcaagaaatcatgagctaatttcttgtaaaa 11127
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6752
Number of Sequences: 1807
Number of extensions: 6752
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)