BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZE05RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1718 1479 0.0
>3x_Contig1718
Length = 19496
Score = 1479 bits (746), Expect = 0.0
Identities = 848/874 (97%), Gaps = 8/874 (0%)
Strand = Plus / Plus
Query: 46 ctaggacaacataccgtaaaacatctaatccgaaacgtttttgacagcgcttatttgtca 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9801 ctaggacaacataccgtaaaacatctaatccgaaacgtttttgacagcgcttatttgtca 9860
Query: 106 ttgagtttaagaaaatgaatctaggagatgtgggtaatcgcagaacattactttcttcaa 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9861 ttgagtttaagaaaatgaatctaggagatgtgggtaatcgcagaacattactttcttcaa 9920
Query: 166 taatgctctctacttgcgccatgtctttgatggtatccatcttcgtgaatactatttcaa 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9921 taatgctctctacttgcgccatgtctttgatggtatccatcttcgtgaatactatttcaa 9980
Query: 226 aaggaattccatcgttaacaagtaaatctatcatctgtgcatcgtattcgctaaatccat 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9981 aaggaattccatcgttaacaagtaaatctatcatctgtgcatcgtattcgctaaatccat 10040
Query: 286 tattggcacttattagcaagaaactgcgacgtaactctcttcttttatgcaaataatcca 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10041 tattggcacttattagcaagaaactgcgacgtaactctcttcttttatgcaaataatcca 10100
Query: 346 tcgtgactttcccttgttccacagttcctttagtaccatatcctggagtatcaatgatgc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10101 tcgtgactttcccttgttccacagttcctttagtaccatatcctggagtatcaatgatgc 10160
Query: 406 gaaacttcccacctacattgaaacaattgatggtctttgtaaaacctgcctttttggagg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10161 gaaacttcccacctacattgaaacaattgatggtctttgtaaaacctgcctttttggagg 10220
Query: 466 catttgcatattcgtttaaactatttcttgtcacctccgtagtgacactgtttaaaagag 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10221 catttgcatattcgtttaaactatttcttgtcacctccgtagtgacactgtttaaaagag 10280
Query: 526 tagatttccctgaattacatcttcccaaaaacgctatttctggtagttggttgatcaact 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10281 tagatttccctgaattacatcttcccaaaaacgctatttctggtagttggttgatcaact 10340
Query: 586 cgaatggaatcccgcccgtcttaccttgatacattttattagaattaatctganggacat 645
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 10341 cgaatggaatcccgcccgtcttaccttgatacattttattagaattaatctgagggacat 10400
Query: 646 cctcagacgccacaggtaacgtcatcgaacctttcttgaaangtgttgatgncattaaat 705
|||||||||| |||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct: 10401 cctcagacgcaacaggtaacgtcatcgaacctttcttgaaagttgttgatg-caataaat 10459
Query: 706 tca-tttcttcatccattatagnttgnattgcttgctgcc-attttccatcaagcgccta 763
||| |||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||
Sbjct: 10460 tcattttcttcatccattatagtttgtattgcttgctgccttttttccatcaagcgccta 10519
Query: 764 acc-tttcacctggtacatcattgaatgtangagcactccatttcgacttgacctttgcc 822
||| |||||||||||||||||||||||||| |||||||||||| |||| |||||||||
Sbjct: 10520 accttttcacctggtacatcattgaatgtaggagcactccattcgaacttaacctttgcc 10579
Query: 823 ttgntgaagaaaaaattgacttgtgataaatctg-agc-tttagaagcgcatattcctta 880
||| |||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||
Sbjct: 10580 ttgttgaagaaaaaattgacttgtgataaatctgaagcttttagaggcgcatattcctta 10639
Query: 881 -taagnntttgatataaa-catttataatggttt 912
|||| ||||||||||| |||||||||| ||||
Sbjct: 10640 ttaagtttttgatataaatcatttataattgttt 10673
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6414
Number of Sequences: 1807
Number of extensions: 6414
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)