BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZE06FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1237 1273 0.0
>3x_Contig1237
Length = 6632
Score = 1273 bits (642), Expect = 0.0
Identities = 690/703 (98%), Gaps = 3/703 (0%)
Strand = Plus / Minus
Query: 87 gtaactatcgtgaattacacggttgaccggctatcatccgcaagtaatatccaagcatgc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1789 gtaactatcgtgaattacacggttgaccggctatcatccgcaagtaatatccaagcatgc 1730
Query: 147 ctagaatcagaactcatgcgaccaaaaaggcccccgaagggttcgacaaaatttctccca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1729 ctagaatcagaactcatgcgaccaaaaaggcccccgaagggttcgacaaaatttctccca 1670
Query: 207 ctctaaacgaatttgctatccaattgaaggaagcggaaagcgaaaagggttcgaaactct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1669 ctctaaacgaatttgctatccaattgaaggaagcggaaagcgaaaagggttcgaaactct 1610
Query: 267 ctacaaagaacacagaatctacgtggcaagtgttccaaatccaccacgaacgaagcagat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1609 ctacaaagaacacagaatctacgtggcaagtgttccaaatccaccacgaacgaagcagat 1550
Query: 327 acgtctacaatttgttctacaagcgcaaagccatatctagagagctttacgagtggctac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1549 acgtctacaatttgttctacaagcgcaaagccatatctagagagctttacgagtggctac 1490
Query: 387 tacgtgaaaaatacgccgataaacaattgatagccaaatggaagaagaaggggtacgaaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1489 tacgtgaaaaatacgccgataaacaattgatagccaaatggaagaagaaggggtacgaaa 1430
Query: 447 aactatgctgtttacaatgcatacagtcaaatgaaacaacaaacggcaaaacttgcatat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1429 aactatgctgtttacaatgcatacagtcaaatgaaacaacaaacggcaaaacttgcatat 1370
Query: 507 gtagagtaccaagagctaccctcgaagccaacgcggccaagaaaaaagaacncgtaacct 566
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1369 gtagagtaccaagagctaccctcgaagccaacgcggccaagaaaaaagaaccggtaacct 1310
Query: 567 tcaaacaatgtattcactgtggttgttcccgatgtgctagcagtgattgaagtccaaaac 626
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1309 tcaaacaatgtattcactgtggttgttccggatgtgctagcagtgattgaagtccaaaac 1250
Query: 627 aacaaagttataaaaggcaaaagtcgattaagaacatacttcaactttactttncgtttc 686
|||||||||| ||||||||||||||||| |||| ||||||||||||||||||| || |||
Sbjct: 1249 aacaaagttaaaaaaggcaaaagtcgataaagaccatacttcaactttactttccg-ttc 1191
Query: 687 cgtctcggtattggcc-aaattnctgcatgtacgcacacttgaatatacaacaatggctg 745
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1190 cgtctcggtattggccaaaattcctgcatgtacgcacacttgaatatacaacaatggctg 1131
Query: 746 tcctatttctgcttttggaaaagtaccgaacaaaaaaaagttt 788
||||||| |||||||| |||||||||||||| |||||||||||
Sbjct: 1130 tcctattcctgctttt-gaaaagtaccgaacgaaaaaaagttt 1089
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6050
Number of Sequences: 1807
Number of extensions: 6050
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)