BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZE07FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1097 1152 0.0
>3x_Contig1097
Length = 4271
Score = 1152 bits (581), Expect = 0.0
Identities = 645/662 (97%), Gaps = 5/662 (0%)
Strand = Plus / Minus
Query: 86 ttgttgatgcaacaccgatttctggaccagcattgatgtggacaccgcagtgagtacttc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2412 ttgttgatgcaacaccgatttctggaccagcattgatgtggacaccgcagtgagtacttc 2353
Query: 146 tagaaatggaagaaccaacactgttcacgatacccaaggtcaatgcacctctttccaaac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2352 tagaaatggaagaaccaacactgttcacgatacccaaggtcaatgcacctctttccaaac 2293
Query: 206 agtaattcaaggacaacatggtgtcagcagtttcaccggattgggaaacaaaaatacaaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2292 agtaattcaaggacaacatggtgtcagcagtttcaccggattgggaaacaaaaatacaaa 2233
Query: 266 catcgtctctaaagattgggcattttctatccaagaaatctgacgctaattccactgata 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2232 catcgtctctaaagattgggcattttctatccaagaaatctgacgctaattccactgata 2173
Query: 326 ctggaatctccgttagctcttcgaaaatggctcttgtagctaaacaagagtgataagaag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2172 ctggaatctccgttagctcttcgaaaatggctcttgtagctaaacaagagtgataagaag 2113
Query: 386 taccacaggcgatcattattaatctacgagctttcctgatggcagacaatctagacttta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2112 taccacaggcgatcattattaatctacgagctttcctgatggcagacaatctagacttta 2053
Query: 446 gaccacccaagttgaccagattgtgttcaaaatctattctacctctcatggtgttcaaag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2052 gaccacccaagttgaccagattgtgttcaaaatctattctacctctcatggtgttcaaag 1993
Query: 506 tagattctggttgttcataaatttccttttgcatgaaatgttggtatggaccctttcat- 564
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1992 tagattctggttgttcataaatttccttttgcatgaaatgttggtatggaccc-ttcata 1934
Query: 565 atttgagccaattccatctcaagggtttgaatggatctgntggcagattctgtcaatttt 624
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1933 atttgagccaattccatctcaagggtttgaatggatctggtggcagattctgtcaatttt 1874
Query: 625 ttgttagctctatggatgtgcaatttaccgtcgtagatgtgagcaatatcattctctttc 684
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
Sbjct: 1873 ttgttagctctatggatgtgcaattcaccgtcgtagatgtgagcaatatcatcgtcttcc 1814
Query: 685 aagaacaggacttttttggngttggtttaacaatggaggcagcattacctggaaagggaa 744
||||||| ||| || |||| || |||| |||||||||||||||| | ||||||||| ||
Sbjct: 1813 aagaacaagaccttcttggtgt--gttttacaatggaggcagcatca-ctggaaaggaaa 1757
Query: 745 aa 746
||
Sbjct: 1756 aa 1755
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7604
Number of Sequences: 1807
Number of extensions: 7604
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)