BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC45ZE07RM1.SCF screened BAC_end
         (936 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1314                                                        1211   0.0  

>3x_Contig1314 
          Length = 6289

 Score = 1211 bits (611), Expect = 0.0
 Identities = 706/722 (97%), Gaps = 13/722 (1%)
 Strand = Plus / Plus

                                                                        
Query: 46   tcgagtatttggcttcttttattgaagagttgaattgggctgctctgcatttcaatgtga 105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3278 tcgagtatttggcttcttttattgaagagttgaattgggctgctctgcatttcaatgtga 3337

                                                                        
Query: 106  tggaatggatgaattttttcttcaaaagtgaggtgtaatgagaattcgctgttgcgtaac 165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3338 tggaatggatgaattttttcttcaaaagtgaggtgtaatgagaattcgctgttgcgtaac 3397

                                                                        
Query: 166  tttccgattttagtttccattgagaaaagtaaaagcgcacaatctttgtgttctgttgaa 225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3398 tttccgattttagtttccattgagaaaagtaaaagcgcacaatctttgtgttctgttgaa 3457

                                                                        
Query: 226  cgacgtaatcatgactattagttctttcttcgaagcgtttttgccatacatataaaacat 285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3458 cgacgtaatcatgactattagttctttcttcgaagcgtttttgccatacatataaaacat 3517

                                                                        
Query: 286  atcgttgcagagattcagtgttgcactcttgtaccttcgactcgacattaaccaatttat 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3518 atcgttgcagagattcagtgttgcactcttgtaccttcgactcgacattaaccaatttat 3577

                                                                        
Query: 346  ctgctagtaaaatcatttcaaaaaaccttcgtttgatgaatatattacttttttctatga 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3578 ctgctagtaaaatcatttcaaaaaaccttcgtttgatgaatatattacttttttctatga 3637

                                                                        
Query: 406  gtttcagctcgtatgcctctttcttttgatattgcgagatccatttattcaaaaacggac 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3638 gtttcagctcgtatgcctctttcttttgatattgcgagatccatttattcaaaaacggac 3697

                                                                        
Query: 466  ttagatgaaagtttcgttctgagaaagtcgcgagttctcttaggtatatttcatgtgcat 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3698 ttagatgaaagtttcgttctgagaaagtcgcgagttctcttaggtatatttcatgtgcat 3757

                                                                        
Query: 526  acttctttttccattctgtgaagcctttgcaaagtaagtatcgtttcattgtcgttgga- 584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 3758 acttctttttccattctgtgaagcctttgcaaagtaagtatcgtttcattgtcgttggat 3817

                                                                        
Query: 585  tataatgaccttcacacatttttagctttcacaacttgaacgatttctgaaagagatgnc 644
            |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
Sbjct: 3818 tataatgaccttcacacatttttagcttccacaacttgaacgatttctgaaggagatg-c 3876

                                                                        
Query: 645  ttttgattgacattttttcgttctgttgaaagcattgcgtttaaacctctcgtggtttcg 704
            |||||||||||| ||||||||||||||| ||||||||||||  |||||||||| ||||||
Sbjct: 3877 ttttgattgaca-tttttcgttctgttg-aagcattgcgtt--aacctctcgt-gtttcg 3931

                                                                        
Query: 705  ctttttatgtttggcaaaggttattattccaggaaaaagttattcagcaattctgcgatt 764
            | |||||||||| ||||||| ||||| |||| |||||||||| ||||||| |||||||||
Sbjct: 3932 c-ttttatgttt-gcaaagg-tatta-tccaagaaaaagtta-tcagcaa-tctgcgatt 3985

              
Query: 765  tt 766
            ||
Sbjct: 3986 tt 3987


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9096
Number of Sequences: 1807
Number of extensions: 9096
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)