BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZE08FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig526 950 0.0
3x_Contig1599 216 6e-56
>3x_Contig526
Length = 2622
Score = 950 bits (479), Expect = 0.0
Identities = 486/487 (99%), Gaps = 1/487 (0%)
Strand = Plus / Minus
Query: 85 caaagatctgggcacctttgtaagatgcaagagtagagatacccatctttgacataactt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 caaagatctgggcacctttgtaagatgcaagagtagagatacccatctttgacataactt 427
Query: 145 tgaagataccaccatcaaccgcgtgtttgtaattatctaataaagtcttatcgtcaattg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tgaagataccaccatcaaccgcgtgtttgtaattatctaataaagtcttatcgtcaattg 367
Query: 205 atgaatcatcgttgttgacatttcggactaatccttcatgattcattctgaccaaggtct 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atgaatcatcgttgttgacatttcggactaatccttcatgattcattctgaccaaggtct 307
Query: 265 ccatggctaggtaagggaaaataccatcacaaccataacctaatagaacacagaaatgat 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccatggctaggtaagggaaaataccatcacaaccataacctaatagaacacagaaatgat 247
Query: 325 gcacctcgcgagcttcaccagtttccaagatcaaagccacctgagaacgctgtttgttgc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gcacctcgcgagcttcaccagtttccaagatcaaagccacctgagaacgctgtttgttgc 187
Query: 385 gaacaagatggtgatgaatggcaccaatagcgatcaacgaagagattgagacccgatccg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 gaacaagatggtgatgaatggcaccaatagcgatcaacgaagagattgagacccgatccg 127
Query: 445 cagataacagtctgtcgctaatgaacaaaatcttctttccttgatcaatagcatcactgg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 cagataacagtctgtcgctaatgaacaaaatcttctttccttgatcaatagcatcactgg 67
Query: 505 cttcctgtgtgattctgtcaatggtagccgtgtagcctaatagaccttcttctttaggga 564
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 cttcctgtgt-attctgtcaatggtagccgtgtagcctaatagaccttcttctttaggga 8
Query: 565 aagtaat 571
|||||||
Sbjct: 7 aagtaat 1
>3x_Contig1599
Length = 10178
Score = 216 bits (109), Expect = 6e-56
Identities = 198/221 (89%), Gaps = 5/221 (2%)
Strand = Plus / Plus
Query: 613 atatttttcagggcttcaaattcgtcccaatgttaaattggcgaatttaaaactaaacga 672
|||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 1 atatttttcaaggcttcaaattcgtcccaatgtaaaattggcgattttaaaactaaacga 60
Query: 673 tcgcattgagaaggatgcatttacaaaggttcccttga-gttctaccaaacatt-caagg 730
|||||||||||||||||||||| |||| |||||||||| || |||| ||||||| |||||
Sbjct: 61 tcgcattgagaaggatgcatttccaaaagttcccttgaggtcctacgaaacattccaagg 120
Query: 731 acatgaccttgggcttacgaattgaatcaattggaaggtttgttacctggggcgaaaagc 790
||||||| |||| || |||||||| |||||||||| ||||||| |||| |||||||||||
Sbjct: 121 acatgacgttggcctcacgaattggatcaattggagggtttgtcacct-gggcgaaaagc 179
Query: 791 tttctggaaatatcatttaataagtacttgggtcttcattt 831
| |||| || ||||| |||| ||||| |||||||||||||
Sbjct: 180 tctctgaaataatcatataat-agtac-tgggtcttcattt 218
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6496
Number of Sequences: 1807
Number of extensions: 6496
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 2
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)