BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZE09FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1289 955 0.0
>3x_Contig1289
Length = 5567
Score = 955 bits (482), Expect = 0.0
Identities = 520/531 (97%), Gaps = 2/531 (0%)
Strand = Plus / Plus
Query: 201 aatatccttcattagtctcttgaaacagaagaagaccattctggaagtcaataagttcga 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 aatatccttcattagtctcttgaaacagaagaagaccattctggaagtcaataagttcga 63
Query: 261 acggtacaagaaaccaatgaaacgaaccaaacccaaacctcttctcttagcggcagccat 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 acggtacaagaaaccaatgaaacgaaccaaacccaaacctcttctcttagcggcagccat 123
Query: 321 cttatagtattcatcggacatcatttcaggttgtagaggagtaccgtcttcgtttgtagg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 cttatagtattcatcggacatcatttcaggttgtagaggagtaccgtcttcgtttgtagg 183
Query: 381 tagttgatcagtccatcctgtttggaattcagtttgacatctttggactaagtaatgcaa 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tagttgatcagtccatcctgtttggaattcagtttgacatctttggactaagtaatgcaa 243
Query: 441 aaccaagtgagaaccagtcttatctggggtttctgagtctttaatgctatcatctaagtc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aaccaagtgagaaccagtcttatctggggtttctgagtctttaatgctatcatctaagtc 303
Query: 501 tttaacgaccttaccacataattgcgcgtacattgatgaccaatgangttcatcgcangc 560
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 304 tttaacgaccttaccacataattgcgcgtacattgatgaccaatgaggttcatcgcaggc 363
Query: 561 cttattgaaaaattgttggatgacaatcttc-aagtctcacccttttctttccatctaga 619
||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 364 cttattgaaaatttgttggatgacaatcttcaaagtctcacccttttcttcccatctaga 423
Query: 620 ttggntagcgatctttatgatatcatcagaaattagttcgaacatttctaatgtcaattt 679
|||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 424 ttggttagcgatcttcatgatatcatcagaaataggttcgaacatttctaatgtcaattt 483
Query: 680 attcagcaatgacttcatctttcttgatgcttctttccgcgtcgttaagtt 730
||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 484 attcagcaatgacttcatctttcttgatgcttc-ttccgcgtcgtaaagtt 533
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7444
Number of Sequences: 1807
Number of extensions: 7444
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)