BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZE09RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1611 1318 0.0
>3x_Contig1611
Length = 15286
Score = 1318 bits (665), Expect = 0.0
Identities = 754/776 (97%), Gaps = 6/776 (0%)
Strand = Plus / Minus
Query: 53 attctctttccgcggcctatccgcggaacggtgatggatgatattctctcctgttccatg 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6107 attctctttccgcggcctatccgcggaacggtgatggatgatattctctcctgttccatg 6048
Query: 113 atattctttaatgaacgcggttttccaattgcctcaaaaaaagagcaatatggaacctaa 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6047 atattctttaatgaacgcggttttccaattgcctcaaaaaaagagcaatatggaacctaa 5988
Query: 173 tggagtctcatcgaaggacatggaatgattggtttcgtgtgccgtaagagaaacacgtac 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5987 tggagtctcatcgaaggacatggaatgattggtttcgtgtgccgtaagagaaacacgtac 5928
Query: 233 atgtttgaaaatctaggcacttgtgcttcgggaagttctatttgaggttaatcaggtgat 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5927 atgtttgaaaatctaggcacttgtgcttcgggaagttctatttgaggttaatcaggtgat 5868
Query: 293 ctttgttgttgttgttttttttattctcattttcctttttgattttcctttggttgaggg 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5867 ctttgttgttgttgttttttttattctcattttcctttttgattttcctttggttgaggg 5808
Query: 353 aattgcgctttacagaatacgttggggaaaagcgatctccacaatgtgccgggtttccca 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5807 aattgcgctttacagaatacgttggggaaaagcgatctccacaatgtgccgggtttccca 5748
Query: 413 ggtgatctgtagaatttggagcctttagccgcgtctgtgcctgcgacatattttaaggaa 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5747 ggtgatctgtagaatttggagcctttagccgcgtctgtgcctgcgacatattttaaggaa 5688
Query: 473 tatctacgtgtctcgtatttccatttctagtactggatgatcaacctgtaaaaagtagca 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5687 tatctacgtgtctcgtatttccatttctagtactggatgatcaacctgtaaaaagtagca 5628
Query: 533 tgtacctgtccgtatttacctgcttggacgtcggttattttccctcatttatcttctgac 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5627 tgtacctgtccgtatttacctgcttggacgtcggttattttccctcatttatcttctgac 5568
Query: 593 tacgtgattatcttgggcgaagagtc-accaaatacggactaatactgcacaaaaagcca 651
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 5567 tacgtgattatcttggcggaagagtcaaccaaatacggactaatactgcacaaaaagcca 5508
Query: 652 tctctacggtgnatcttttgggtcttatctttcactctttattccttgcaggaatttgta 711
|||||||| || ||| |||| |||||||||||||||||| || |||||||||||||||||
Sbjct: 5507 tctctacgttgtatc-tttgtgtcttatctttcactcttaatcccttgcaggaatttgta 5449
Query: 712 taccaataaagccctg-actgagatgagcggctgcttatgggttaaacttcacgttttca 770
||||||| |||||||| ||||||||||||||||||| |||||| |||| ||||||||||
Sbjct: 5448 taccaat-aagccctgaactgagatgagcggctgctagtgggtt-aactccacgttttca 5391
Query: 771 tgtccttcttttctttcaaatgagaattatattaaatttgttggttaaacagcttg 826
||| ||||||||||| || |||||| |||||| | || ||||||||||||||||||
Sbjct: 5390 tgt-cttcttttcttccagatgagagttatatgatatctgttggttaaacagcttg 5336
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8970
Number of Sequences: 1807
Number of extensions: 8970
Number of successful extensions: 127
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)